reprophylo analysis from Sun Oct 19 23:27:36 2014

Data

Species Representation In Sequence Data

species                                       MT-CO1   MT-CO2   MT-CO3   DNA_polymerase_alpha_catalytic_subunit   Cystatin-Igu-3   cygb-2   MKL1'   BDNF   SLC30A1   GPR37   RT   MT-ND1   MT-ND2   5.8S_ribosomal_RNA   MT-ND4   MT-ND5   MT-ND6   PTGER4   FSTL5   INHBA   citrate_synthase   MT-ATP8   R35   MT-ATP6   FSHR   rrnL   C_mos   rrnS   amelogenin_T2L_splicing_form_2   Cystatin-Igu-1   Cystatin-Igu-2   ECEL1   BMP2   AKAP9   Cyco-UA   AHR   GALR1   ENC1   RNF103   ha1   28s   ADNP   GAPDH   GARS-AIRS-GART   CVF-Igu-1   PRLR   CRiSP-Igu-2   BACH1   JUN   MT-ND4L   distal-less   cryba2   protein_tyrosine_phosphatase_non-receptor_type_12   CARD4   amelogenin_T2S_splicing_form_1   MT-CYB   TSHZ1   histone_H3a   RAG2   MT-ND3   leucine_zipper_tumor_suppressor_1   ZEB2   Amcr-UB   DNAH3   Amcr-UA   HLCS   RAG1   VCPIP   Cyca-UA   NT3   kunitz-Igu-1   RAG-1   NGFB   pp   SNCAIP   lactate_dehydrogenase_A   lactate_dehydrogenase_B   HOXA13   GPR149   BHLHB2   NT-3   SLC8A1   SLC8A3   NTF3   src   muscle-type_lactate_dehydrogenase   ZFP36L1   GHSR   Igig-UB   mb   LRRN1   18s   ZHFX1b   Ctcl-UA   AMEL   pin   MSH6   prt   UBN1   pancreatic_ribonuclease_precursor   CAND1   Cosu-UB   Cosu-UA   crygn   CXCR4   Cyri-UA   BNDF   TRAF6   MLL   sws1   alpha_actin   Amcr-DAB1   Amcr-DAB2   Amcr-DAB3   Amcr-DAB4   Amcr-DAB5   CILP   muscle-type_(A4)_lactate_dehydrogenase   NKTR   PNN   cygb-1   Ctde-UA   CRiSP-Igu-1   alpha_enolase   
Conolophus marthae                            0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                16       0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura nubila                                0        0        0        0                                        0                0        0       1      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         1     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       1     0         0             0        0                                                   0       0                                1        0       0             1      0        0                                   0      0         0       0         0      1      0       0         1     0              0       0      0    0        0                         0                         1        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         1      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura cychlura figginsi                     0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura cychlura cychlura                     0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Sauromalus varius                             0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                4        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura bakeri                             0        0        0        0                                        0                0        0       0      0         0       0    0        0        3                    13       0        0        0        0       0       0                  0         0     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     3     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                4        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura nubila nubila                         0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    9        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura hemilopha macrolopha               0        0        10       0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                10       0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura hemilopha                          0        0        6        0                                        0                0        0       0      0         0       0    0        0        0                    6        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                8        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             3               
Ctenosaura oaxacana                           0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    16       0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura melanosterna                       0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    10       0        0        0        0       0       0                  0         0     0         0      0      2       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                9        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura defensor                           0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        1         0             0               
Iguana iguana                                 2        2        2        1                                        1                1        0       0      0         0       0    2        2        0                    27       2        2        0        0       0       1                  2         0     2         0      3      4       3      0                                1                1                0       0      0       0         0     0       0      0        2     1     0      2       1                1           0      1             0       0     2         0             1        0                                                   0       0                                4        0       1             0      2        0                                   0      0         0       0         0      0      0       0         2     1              0       0      1    0        1                         1                         0        0        0        0      0        0        0      1     1                                   0         0      3         1    0       0     0        0         0      1     0      1     0      1                                   0       0         0         2       0       0         0      0       0     1      0             0           0           0           0           0           0      0                                        0      0     1        0         1             1               
Ctenosaura quinquecarinata                    0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    11       0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura flavidorsalis                      0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    43       0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Brachylophus fasciatus                        1        0        0        0                                        0                0        1       2      1         1       0    1        1        0                    1        0        0        1        1       1       0                  0         1     0         1      0      1       0      0                                0                0                1       1      1       0         1     1       1      1        0     0     1      0       0                0           0      0             1       0     0         1             0        1                                                   1       0                                8        0       0             0      0        1                                   1      0         1       0         1      2      1       0         0     0              0       1      0    1        0                         0                         0        0        1        1      1        1        1      0     0                                   1         1      0         0    0       0     1        0         0      0     1      0     1      0                                   1       0         0         0       1       0         0      1       0     0      0             0           0           0           0           0           1      0                                        1      1     0        0         0             0               
Ctenosaura similis x bakeri                   0        0        0        0                                        0                0        0       0      0         0       0    0        0        4                    1        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     4     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura hemilopha x Ctenosaura pectinata   0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             1               
Cyclura cychlura inornata                     0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura ricordi                               0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    3        0        0        0        0       0       0                  0         0     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         1     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Conolophus pallidus                           0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                7        0       0             0      0        0                                   0      0         0       0         0      0      0       0         1     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura carinata carinata                     0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura cornuta stejnegeri                    0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura hemilopha conspicuosa              0        0        7        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                7        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura cornuta cornuta                       0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Iguana delicatissima                          0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         1     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura pectinata                          0        0        11       0                                        0                0        0       0      0         0       0    0        0        0                    92       0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                11       0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             12              
Ctenosaura oedirhina                          0        0        0        0                                        0                0        0       0      0         0       0    0        0        4                    10       0        0        0        0       0       0                  0         0     0         0      0      3       0      0                                0                0                0       0      0       0         0     0       0      0        0     4     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                3        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Brachylophus vitiensis                        0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                12       0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura pinguis                               0        0        0        0                                        0                0        0       1      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      0       2      0                                0                0                0       0      0       0         0     0       0      1        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         1     0              1       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     1        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Sauromalus australis                          1        0        0        0                                        0                0        0       0      0         0       0    1        1        0                    1        0        0        0        0       0       0                  0         0     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                1        0       0             0      0        0                                   0      0         0       0         0      0      0       0         1     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura similis                            0        0        0        0                                        0                0        0       0      0         0       0    0        0        10                   21       0        0        0        0       0       0                  0         0     0         0      0      1       0      1                                0                0                0       0      0       0         0     0       0      0        0     10    0      0       0                0           0      0             0       0     0         0             0        0                                                   0       1                                3        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             1               
Sauromalus hispidus                           0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                6        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura collei                                0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura cornuta                               0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       1         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                1        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura carinata                              0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       1         1     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Dipsosaurus dorsalis                          1        0        0        0                                        0                0        1       1      1         1       0    1        1        0                    14       0        0        1        1       1       0                  0         0     0         1      1      3       0      0                                0                0                1       1      1       0         1     1       1      0        0     1     1      0       0                0           1      0             1       0     0         1             0        0                                                   1       0                                2        1       0             0      0        1                                   1      0         1       0         1      2      1       0         1     0              1       1      0    1        0                         0                         0        1        1        0      1        1        1      0     0                                   1         1      0         0    1       1     1        0         0      0     1      0     1      0                                   1       0         0         0       1       0         1      1       1     0      1             0           0           0           0           0           1      1                                        1      1     0        0         0             0               
Amblyrhynchus cristatus                       0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       1                  0         0     0         0      0      0       1      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                12       0       0             0      0        0                                   0      5         0       2         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     1                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             1           2           2           2           1           0      0                                        0      0     0        0         0             0               
Conolophus subcristatus                       0        0        0        0                                        0                0        0       0      0         0       1    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      1       4      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                130      0       0             0      0        0                                   0      0         0       0         0      0      0       0         1     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       4         1         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura nubila caymanensis                    0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura hemilopha nolascensis              0        0        8        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                8        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura acanthura                          0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    2        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             3               
Ctenosaura clarki                             0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    0        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        1         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Sauromalus klauberi                           0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      1       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         1     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Cyclura rileyi                                0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    1        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       1         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Sauromalus ater                               1        0        5        0                                        0                0        1       1      1         1       0    1        1        0                    2        0        0        1        1       1       0                  0         1     0         1      0      2       0      0                                0                0                1       1      1       0         1     1       1      0        0     0     1      0       0                0           1      0             1       0     0         1             0        1                                                   1       0                                23       0       0             0      0        1                                   1      0         1       0         1      1      1       0         1     0              1       1      0    1        0                         0                         0        0        1        0      1        1        1      0     0                                   1         1      0         0    1       0     0        0         0      0     1      0     1      0                                   1       0         0         0       1       0         0      1       0     0      0             0           0           0           0           0           1      0                                        1      1     0        0         0             0               
Cyclura nubila lewisi                         0        0        0        0                                        0                0        0       0      0         0       0    0        0        0                    3        0        0        0        0       0       0                  0         0     0         0      0      0       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                0        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               
Ctenosaura palearis                           1        0        0        0                                        0                0        0       0      0         0       0    1        1        0                    7        0        0        0        0       0       0                  0         0     0         0      0      2       0      0                                0                0                0       0      0       0         0     0       0      0        0     0     0      0       0                0           0      0             0       0     0         0             0        0                                                   0       0                                3        0       0             0      0        0                                   0      0         0       0         0      0      0       0         0     0              0       0      0    0        0                         0                         0        0        0        0      0        0        0      0     0                                   0         0      0         0    0       0     0        0         0      0     0      0     0      0                                   0       0         0         0       0       0         0      0       0     0      0             0           0           0           0           0           0      0                                        0      0     0        0         0             0               

Distribution of sequence lengths

Distribution of sequence statistic "GC_content"

Distribution of sequence statistic "nuc_degen_prop"

Distribution of sequence statistic "prot_degen_prop"

Methods

Seuqence Alignment Method "MafftLinsi", method ID: 571281413757193.73

Included loci :MT-CO1, MT-CO3, BDNF, MT-ND1, MT-ND2, 5.8S_ribosomal_RNA, MT-ND4, rrnL, C_mos, rrnS, 28s, MT-CYB, Amcr-UB, RAG1, NT3, Cosu-UB, alpha_enolase, 
Total execution time: 27.2819252014 sec'
Performed on: Sun Oct 19 23:19:53 2014
Platform: Linux-3.13.0-37-generic-x86_64-with-Ubuntu-14.04-trusty
Processor: x86_64
Python build: defaultMar 22 2014 22:59:56
Python compiler: GCC 4.8.2
Python implementation: CPython
Python version: 2.7.6
ete2 version: 2.2rev1056
biopython version: 1.64
dendropy version: 3.12.0
cloud version: 2.8.5
User: amir-TECRA-W50-A
Program and version: Get mafft to spit version to stdout

Command lines:
Alignment "Amcr-UB":
mafft --auto 571281413757193.73_Amcr-UB.fasta

Alignment "MT-CO1":
mafft --auto 571281413757193.73_MT-CO1.fasta

Alignment "MT-ND2":
mafft --auto 571281413757193.73_MT-ND2.fasta

Alignment "MT-CO3":
mafft --auto 571281413757193.73_MT-CO3.fasta

Alignment "MT-ND4":
mafft --auto 571281413757193.73_MT-ND4.fasta

Alignment "MT-ND1":
mafft --auto 571281413757193.73_MT-ND1.fasta

Alignment "MT-CYB":
mafft --auto 571281413757193.73_MT-CYB.fasta

Alignment "NT3":
mafft --auto 571281413757193.73_NT3.fasta

Alignment "Cosu-UB":
mafft --auto 571281413757193.73_Cosu-UB.fasta

Alignment "rrnL":
mafft --auto 571281413757193.73_rrnL.fasta

Alignment "C_mos":
mafft --auto 571281413757193.73_C_mos.fasta

Alignment "rrnS":
mafft --auto 571281413757193.73_rrnS.fasta

Alignment "5.8S_ribosomal_RNA":
mafft --auto 571281413757193.73_5.8S_ribosomal_RNA.fasta

Alignment "alpha_enolase":
mafft --auto 571281413757193.73_alpha_enolase.fasta

Alignment "RAG1":
mafft --auto 571281413757193.73_RAG1.fasta

Alignment "BDNF":
mafft --auto 571281413757193.73_BDNF.fasta

Alignment "28s":
mafft --auto 571281413757193.73_28s.fasta

Trimal alignment trimming Method "gappyout", method ID: 490311413757240.52

Included alignments :C_mos@MafftLinsi, RAG1@MafftLinsi, NT3@MafftLinsi, Cosu-UB@MafftLinsi, alpha_enolase@MafftLinsi, Amcr-UB@MafftLinsi, 28s@MafftLinsi, MT-ND1@MafftLinsi, MT-CYB@MafftLinsi, MT-CO3@MafftLinsi, MT-ND2@MafftLinsi, MT-CO1@MafftLinsi, MT-ND4@MafftLinsi, BDNF@MafftLinsi, rrnS@MafftLinsi, 
Total execution time: 3.06151199341 sec'
Performed on: Sun Oct 19 23:20:40 2014
Platform: Linux-3.13.0-37-generic-x86_64-with-Ubuntu-14.04-trusty
Processor: x86_64
Python build: defaultMar 22 2014 22:59:56
Python compiler: GCC 4.8.2
Python implementation: CPython
Python version: 2.7.6
ete2 version: 2.2rev1056
biopython version: 1.64
dendropy version: 3.12.0
cloud version: 2.8.5
User: amir-TECRA-W50-A
Program and version: trimal: trimAl 1.2rev59


Command lines:
Alignment "C_mos@MafftLinsi@gappyout":
trimal -in 490311413757240.52_C_mos@MafftLinsi.fasta -gappyout


Alignment "rrnS@MafftLinsi@gappyout":
trimal -in 490311413757240.52_rrnS@MafftLinsi.fasta -gappyout


Alignment "BDNF@MafftLinsi@gappyout":
trimal -in 490311413757240.52_BDNF@MafftLinsi.fasta -gappyout


Alignment "MT-ND4@MafftLinsi@gappyout":
trimal -in 490311413757240.52_MT-ND4@MafftLinsi.fasta -gappyout


Alignment "RAG1@MafftLinsi@gappyout":
trimal -in 490311413757240.52_RAG1@MafftLinsi.fasta -gappyout


Alignment "MT-ND1@MafftLinsi@gappyout":
trimal -in 490311413757240.52_MT-ND1@MafftLinsi.fasta -gappyout


Alignment "NT3@MafftLinsi@gappyout":
trimal -in 490311413757240.52_NT3@MafftLinsi.fasta -gappyout


Alignment "alpha_enolase@MafftLinsi@gappyout":
trimal -in 490311413757240.52_alpha_enolase@MafftLinsi.fasta -gappyout


Alignment "Cosu-UB@MafftLinsi@gappyout":
trimal -in 490311413757240.52_Cosu-UB@MafftLinsi.fasta -gappyout


Alignment "Amcr-UB@MafftLinsi@gappyout":
trimal -in 490311413757240.52_Amcr-UB@MafftLinsi.fasta -gappyout


Alignment "MT-ND2@MafftLinsi@gappyout":
trimal -in 490311413757240.52_MT-ND2@MafftLinsi.fasta -gappyout


Alignment "MT-CO3@MafftLinsi@gappyout":
trimal -in 490311413757240.52_MT-CO3@MafftLinsi.fasta -gappyout


Alignment "MT-CYB@MafftLinsi@gappyout":
trimal -in 490311413757240.52_MT-CYB@MafftLinsi.fasta -gappyout


Alignment "28s@MafftLinsi@gappyout":
trimal -in 490311413757240.52_28s@MafftLinsi.fasta -gappyout


Alignment "MT-CO1@MafftLinsi@gappyout":
trimal -in 490311413757240.52_MT-CO1@MafftLinsi.fasta -gappyout

Raxml Tree Reconstruction Method "fD_fb", method ID: 323661413757398.84

Included alignments :MT-ND2@MafftLinsi@gappyout, C_mos@MafftLinsi@gappyout, rrnS@MafftLinsi@gappyout, BDNF@MafftLinsi@gappyout, NT3@MafftLinsi@gappyout, RAG1@MafftLinsi@gappyout, alpha_enolase@MafftLinsi@gappyout, MT-CO3@MafftLinsi@gappyout, Cosu-UB@MafftLinsi@gappyout, MT-CYB@MafftLinsi@gappyout, 28s@MafftLinsi@gappyout, MT-CO1@MafftLinsi@gappyout, Amcr-UB@MafftLinsi@gappyout, MT-ND1@MafftLinsi@gappyout, 
Total execution time: 82.1648850441 sec'
Performed on: Sun Oct 19 23:23:18 2014
Platform: Linux-3.13.0-37-generic-x86_64-with-Ubuntu-14.04-trusty
Processor: x86_64
Python build: defaultMar 22 2014 22:59:56
Python compiler: GCC 4.8.2
Python implementation: CPython
Python version: 2.7.6
ete2 version: 2.2rev1056
biopython version: 1.64
dendropy version: 3.12.0
cloud version: 2.8.5
User: amir-TECRA-W50-A
Program and version: raxmlHPC-PTHREADS-SSE3: This is RAxML version 8.0.12 released by Alexandros Stamatakis on March 6 2014.


Command lines:
Alignment "MT-ND2@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_MT-ND2@MafftLinsi@gappyout0 -p 2 -s 323661413757398.84_MT-ND2@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_MT-ND2@MafftLinsi@gappyout1 -p 957 -s 323661413757398.84_MT-ND2@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_MT-ND2@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_MT-ND2@MafftLinsi@gappyout0


Alignment "C_mos@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_C_mos@MafftLinsi@gappyout0 -p 123 -s 323661413757398.84_C_mos@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_C_mos@MafftLinsi@gappyout1 -p 348 -s 323661413757398.84_C_mos@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_C_mos@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_C_mos@MafftLinsi@gappyout0


Alignment "rrnS@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_rrnS@MafftLinsi@gappyout0 -p 542 -s 323661413757398.84_rrnS@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_rrnS@MafftLinsi@gappyout1 -p 611 -s 323661413757398.84_rrnS@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_rrnS@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_rrnS@MafftLinsi@gappyout0


Alignment "BDNF@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_BDNF@MafftLinsi@gappyout0 -p 863 -s 323661413757398.84_BDNF@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_BDNF@MafftLinsi@gappyout1 -p 358 -s 323661413757398.84_BDNF@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_BDNF@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_BDNF@MafftLinsi@gappyout0


Alignment "NT3@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_NT3@MafftLinsi@gappyout0 -p 964 -s 323661413757398.84_NT3@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_NT3@MafftLinsi@gappyout1 -p 574 -s 323661413757398.84_NT3@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_NT3@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_NT3@MafftLinsi@gappyout0


Alignment "RAG1@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_RAG1@MafftLinsi@gappyout0 -p 891 -s 323661413757398.84_RAG1@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_RAG1@MafftLinsi@gappyout1 -p 599 -s 323661413757398.84_RAG1@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_RAG1@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_RAG1@MafftLinsi@gappyout0


Alignment "alpha_enolase@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_alpha_enolase@MafftLinsi@gappyout0 -p 73 -s 323661413757398.84_alpha_enolase@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_alpha_enolase@MafftLinsi@gappyout1 -p 685 -s 323661413757398.84_alpha_enolase@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_alpha_enolase@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_alpha_enolase@MafftLinsi@gappyout0


Alignment "MT-CO3@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_MT-CO3@MafftLinsi@gappyout0 -p 232 -s 323661413757398.84_MT-CO3@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_MT-CO3@MafftLinsi@gappyout1 -p 971 -s 323661413757398.84_MT-CO3@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_MT-CO3@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_MT-CO3@MafftLinsi@gappyout0


Alignment "Cosu-UB@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_Cosu-UB@MafftLinsi@gappyout0 -p 797 -s 323661413757398.84_Cosu-UB@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_Cosu-UB@MafftLinsi@gappyout1 -p 589 -s 323661413757398.84_Cosu-UB@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_Cosu-UB@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_Cosu-UB@MafftLinsi@gappyout0


Alignment "MT-CYB@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_MT-CYB@MafftLinsi@gappyout0 -p 429 -s 323661413757398.84_MT-CYB@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_MT-CYB@MafftLinsi@gappyout1 -p 569 -s 323661413757398.84_MT-CYB@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_MT-CYB@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_MT-CYB@MafftLinsi@gappyout0


Alignment "28s@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_28s@MafftLinsi@gappyout0 -p 828 -s 323661413757398.84_28s@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_28s@MafftLinsi@gappyout1 -p 925 -s 323661413757398.84_28s@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_28s@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_28s@MafftLinsi@gappyout0


Alignment "MT-ND1@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_MT-ND1@MafftLinsi@gappyout0 -p 480 -s 323661413757398.84_MT-ND1@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_MT-ND1@MafftLinsi@gappyout1 -p 433 -s 323661413757398.84_MT-ND1@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_MT-ND1@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_MT-ND1@MafftLinsi@gappyout0


Alignment "Amcr-UB@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_Amcr-UB@MafftLinsi@gappyout0 -p 395 -s 323661413757398.84_Amcr-UB@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_Amcr-UB@MafftLinsi@gappyout1 -p 908 -s 323661413757398.84_Amcr-UB@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_Amcr-UB@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_Amcr-UB@MafftLinsi@gappyout0


Alignment "MT-CO1@MafftLinsi@gappyout":
raxmlHPC-PTHREADS-SSE3 -f D -m GTRGAMMA -n 323661413757398.84_MT-CO1@MafftLinsi@gappyout0 -p 244 -s 323661413757398.84_MT-CO1@MafftLinsi@gappyout.fasta -T 5 -N 1
raxmlHPC-PTHREADS-SSE3 -f b -m GTRGAMMA -n 323661413757398.84_MT-CO1@MafftLinsi@gappyout1 -p 945 -s 323661413757398.84_MT-CO1@MafftLinsi@gappyout.fasta -t RAxML_bestTree.323661413757398.84_MT-CO1@MafftLinsi@gappyout0 -T 5 -z RAxML_rellBootstrap.323661413757398.84_MT-CO1@MafftLinsi@gappyout0

Alignment summaries

Alignment name: MT-CO1@MafftLinsi
Alignment length: 1548
Number of rows: 7
Average gap prop.: 0.700443
Non-uniform columns: 1545
Parsimony informative: 0
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: MT-CO3@MafftLinsi
Alignment length: 786
Number of rows: 49
Average gap prop.: 0.172119
Non-uniform columns: 606
Parsimony informative: 171
Undetermined sequences: 0
Collapsed seqeunce count: 30



Alignment name: BDNF@MafftLinsi
Alignment length: 670
Number of rows: 6
Average gap prop.: 0.000249
Non-uniform columns: 650
Parsimony informative: 9
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: MT-ND1@MafftLinsi
Alignment length: 969
Number of rows: 7
Average gap prop.: 0.653546
Non-uniform columns: 937
Parsimony informative: 19
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: MT-ND2@MafftLinsi
Alignment length: 1038
Number of rows: 7
Average gap prop.: 0.000000
Non-uniform columns: 648
Parsimony informative: 188
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: 5.8S_ribosomal_RNA@MafftLinsi
Alignment length: 72
Number of rows: 21
Average gap prop.: 0.000000
Non-uniform columns: 72
Parsimony informative: 0
Undetermined sequences: 0
Collapsed seqeunce count: 1
Alignment 5.8S_ribosomal_RNA@MafftLinsi has less than 4 unique sequences and will be dropped



Alignment name: MT-ND4@MafftLinsi
Alignment length: 1386
Number of rows: 319
Average gap prop.: 0.602532
Non-uniform columns: 1013
Parsimony informative: 328
Undetermined sequences: 0
Collapsed seqeunce count: 245



Alignment name: rrnL@MafftLinsi
Alignment length: 1563
Number of rows: 4
Average gap prop.: 0.342131
Non-uniform columns: 1479
Parsimony informative: 5
Undetermined sequences: 0
Collapsed seqeunce count: 3
Alignment rrnL@MafftLinsi has less than 4 unique sequences and will be dropped



Alignment name: C_mos@MafftLinsi
Alignment length: 504
Number of rows: 27
Average gap prop.: 0.251690
Non-uniform columns: 449
Parsimony informative: 36
Undetermined sequences: 0
Collapsed seqeunce count: 20



Alignment name: rrnS@MafftLinsi
Alignment length: 956
Number of rows: 10
Average gap prop.: 0.597280
Non-uniform columns: 871
Parsimony informative: 75
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: 28s@MafftLinsi
Alignment length: 749
Number of rows: 23
Average gap prop.: 0.773263
Non-uniform columns: 470
Parsimony informative: 19
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: MT-CYB@MafftLinsi
Alignment length: 1140
Number of rows: 293
Average gap prop.: 0.136207
Non-uniform columns: 595
Parsimony informative: 466
Undetermined sequences: 0
Collapsed seqeunce count: 160



Alignment name: Amcr-UB@MafftLinsi
Alignment length: 1095
Number of rows: 5
Average gap prop.: 0.004384
Non-uniform columns: 1019
Parsimony informative: 39
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: RAG1@MafftLinsi
Alignment length: 2948
Number of rows: 6
Average gap prop.: 0.604478
Non-uniform columns: 2706
Parsimony informative: 35
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: NT3@MafftLinsi
Alignment length: 526
Number of rows: 13
Average gap prop.: 0.068587
Non-uniform columns: 374
Parsimony informative: 15
Undetermined sequences: 0
Collapsed seqeunce count: 9



Alignment name: Cosu-UB@MafftLinsi
Alignment length: 1086
Number of rows: 4
Average gap prop.: 0.000000
Non-uniform columns: 989
Parsimony informative: 21
Undetermined sequences: 0
Collapsed seqeunce count: 4



Alignment name: alpha_enolase@MafftLinsi
Alignment length: 88
Number of rows: 21
Average gap prop.: 0.000000
Non-uniform columns: 84
Parsimony informative: 2
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: C_mos@MafftLinsi@gappyout
Alignment length: 370
Number of rows: 27
Average gap prop.: 0.035235
Non-uniform columns: 322
Parsimony informative: 36
Undetermined sequences: 0
Collapsed seqeunce count: 19



Alignment name: rrnS@MafftLinsi@gappyout
Alignment length: 703
Number of rows: 10
Average gap prop.: 0.543101
Non-uniform columns: 625
Parsimony informative: 75
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: BDNF@MafftLinsi@gappyout
Alignment length: 669
Number of rows: 6
Average gap prop.: 0.000000
Non-uniform columns: 650
Parsimony informative: 9
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: MT-ND4@MafftLinsi@gappyout
Alignment length: 361
Number of rows: 319
Average gap prop.: 0.040440
Non-uniform columns: 179
Parsimony informative: 162
Undetermined sequences: 10
Collapsed seqeunce count: 170
Alignment MT-ND4@MafftLinsi@gappyout has undetermined sequences and will be dropped



Alignment name: RAG1@MafftLinsi@gappyout
Alignment length: 901
Number of rows: 6
Average gap prop.: 0.120607
Non-uniform columns: 669
Parsimony informative: 35
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: MT-ND1@MafftLinsi@gappyout
Alignment length: 82
Number of rows: 7
Average gap prop.: 0.001742
Non-uniform columns: 50
Parsimony informative: 19
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: NT3@MafftLinsi@gappyout
Alignment length: 487
Number of rows: 13
Average gap prop.: 0.008056
Non-uniform columns: 339
Parsimony informative: 14
Undetermined sequences: 0
Collapsed seqeunce count: 9



Alignment name: alpha_enolase@MafftLinsi@gappyout
Alignment length: 88
Number of rows: 21
Average gap prop.: 0.000000
Non-uniform columns: 84
Parsimony informative: 2
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: Cosu-UB@MafftLinsi@gappyout
Alignment length: 1086
Number of rows: 4
Average gap prop.: 0.000000
Non-uniform columns: 989
Parsimony informative: 21
Undetermined sequences: 0
Collapsed seqeunce count: 4



Alignment name: Amcr-UB@MafftLinsi@gappyout
Alignment length: 1083
Number of rows: 5
Average gap prop.: 0.000000
Non-uniform columns: 1007
Parsimony informative: 39
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: MT-ND2@MafftLinsi@gappyout
Alignment length: 1038
Number of rows: 7
Average gap prop.: 0.000000
Non-uniform columns: 648
Parsimony informative: 188
Undetermined sequences: 0
Collapsed seqeunce count: 6



Alignment name: MT-CO3@MafftLinsi@gappyout
Alignment length: 643
Number of rows: 49
Average gap prop.: 0.000000
Non-uniform columns: 464
Parsimony informative: 170
Undetermined sequences: 0
Collapsed seqeunce count: 29



Alignment name: MT-CYB@MafftLinsi@gappyout
Alignment length: 819
Number of rows: 293
Average gap prop.: 0.062429
Non-uniform columns: 417
Parsimony informative: 351
Undetermined sequences: 0
Collapsed seqeunce count: 149



Alignment name: 28s@MafftLinsi@gappyout
Alignment length: 127
Number of rows: 23
Average gap prop.: 0.002396
Non-uniform columns: 34
Parsimony informative: 19
Undetermined sequences: 0
Collapsed seqeunce count: 5



Alignment name: MT-CO1@MafftLinsi@gappyout
Alignment length: 30
Number of rows: 7
Average gap prop.: 0.000000
Non-uniform columns: 27
Parsimony informative: 0
Undetermined sequences: 0
Collapsed seqeunce count: 4

Alignment statistics before trimming

Trimal's Residue Similarity Score (-scc)

Trimal's column gap gcore (-sgc)

Alignment statistics after trimming

"Trimal's Residue Similarity Score (-scc)

Trimal's column gap gcore (-sgc)

Robinson-Foulds distances 


Legend
#         LOCUS               ALIGNMENT METHOD    TRIMMING METHOD     TREE METHOD         
0         alpha_enolase       MafftLinsi          gappyout            fD_fb               
1         MT-ND1              MafftLinsi          gappyout            fD_fb               
2         Amcr-UB             MafftLinsi          gappyout            fD_fb               
3         NT3                 MafftLinsi          gappyout            fD_fb               
4         Cosu-UB             MafftLinsi          gappyout            fD_fb               
5         RAG1                MafftLinsi          gappyout            fD_fb               
6         MT-CO1              MafftLinsi          gappyout            fD_fb               
7         BDNF                MafftLinsi          gappyout            fD_fb               
8         MT-ND2              MafftLinsi          gappyout            fD_fb               
9         MT-CO3              MafftLinsi          gappyout            fD_fb               
10        28s                 MafftLinsi          gappyout            fD_fb               
11        rrnS                MafftLinsi          gappyout            fD_fb               
12        C_mos               MafftLinsi          gappyout            fD_fb               
13        MT-CYB              MafftLinsi          gappyout            fD_fb               

Trees

alpha_enolase
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_alpha_enolase@MafftLinsi@gappyout

newick format

((EU250325.1_f0:9.27311e-07,(EU250327.1_f0:0.0115164,EU250326.1_f0:0.0114309)0:9.27311e-07)83:0.00572754,((EU445366.1_f0:9.27311e-07,(EU250311.1_f0:9.27311e-07,EU250310.1_f0:9.27311e-07)100:9.27311e-07)100:0.0114297,((EU250318.1_f0:9.27311e-07,(EU250328.1_f0:9.27311e-07,EU250316.1_f0:9.27311e-07)1:9.27311e-07)0:9.27311e-07,((EU250319.1_f0:9.27311e-07,EU250321.1_f0:9.27311e-07)0:9.27311e-07,((EU250313.1_f0:9.27311e-07,(EU250324.1_f0:9.27311e-07,EU250323.1_f0:9.27311e-07)80:9.27311e-07)0:9.27311e-07,(EU250314.1_f0:9.27311e-07,(EU250315.1_f0:9.27311e-07,(EU250317.1_f0:9.27311e-07,((EU250322.1_f0:9.27311e-07,EU250320.1_f0:9.27311e-07)0:9.27311e-07,(EU445367.1_f0:9.27311e-07,EU250312.1_f0:9.27311e-07)0:9.27311e-07)0:9.27311e-07)0:9.27311e-07)0:9.27311e-07)0:9.27311e-07)0:9.27311e-07)0:9.27311e-07)79:9.27311e-07)83:0.00572754);


nhx format

(EU250324.1_f0:9.27311e-07[&&NHX:dist=9.27310547059e-07:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout:annotation_references=_Reference_title_'Diversification in the northern neotropics_ mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU250324.1_f0:db_xref=GI_167508643:source_haplotype=AE-15:protein_id=ABZ81528.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura pectinata:annotation_gi=167508642:source_db_xref=taxon_496808:name=EU250324.1_f0:annotation_accessions=_'EU250324'_:source_feature_id=EU250324.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura 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Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU250314.1_f0:db_xref=GI_167508623:source_haplotype=AE-5:protein_id=ABZ81518.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura pectinata:annotation_gi=167508622:source_db_xref=taxon_496808:name=EU250314.1_f0:annotation_accessions=_'EU250314'_:source_feature_id=EU250314.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura pectinata:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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pectinata:annotation_gi=167508624:source_db_xref=taxon_496808:name=EU250315.1_f0:annotation_accessions=_'EU250315'_:source_feature_id=EU250315.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura pectinata:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:annotation_sequence_version=1],(EU250317.1_f0:9.27311e-07[&&NHX:dist=9.27310547059e-07:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout:annotation_references=_Reference_title_'Diversification in the northern neotropics_ mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU250317.1_f0:db_xref=GI_167508629:source_haplotype=AE-8:protein_id=ABZ81521.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura pectinata:annotation_gi=167508628:source_db_xref=taxon_496808:name=EU250317.1_f0:annotation_accessions=_'EU250317'_:source_feature_id=EU250317.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura pectinata:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:annotation_sequence_version=1],((EU250322.1_f0:9.27311e-07[&&NHX:dist=9.27310547059e-07:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout:annotation_references=_Reference_title_'Diversification in the northern neotropics_ mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura hemilopha:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU250322.1_f0:db_xref=GI_167508639:source_haplotype=AE-13:protein_id=ABZ81526.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura hemilopha:annotation_gi=167508638:source_db_xref=taxon_51210:name=EU250322.1_f0:annotation_accessions=_'EU250322'_:source_feature_id=EU250322.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura hemilopha:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:annotation_sequence_version=1],EU250320.1_f0:9.27311e-07[&&NHX:dist=9.27310547059e-07:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout:annotation_references=_Reference_title_'Diversification in the northern neotropics_ mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura hemilopha x Ctenosaura pectinata:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU250320.1_f0:db_xref=GI_167508635:source_haplotype=AE-11:protein_id=ABZ81524.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura hemilopha x Ctenosaura pectinata:annotation_gi=167508634:source_db_xref=taxon_496810:name=EU250320.1_f0:annotation_accessions=_'EU250320'_:source_feature_id=EU250320.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura hemilopha x Ctenosaura pectinata:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:annotation_sequence_version=1])0:9.27311e-07[&&NHX:support=0.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout],(EU445367.1_f0:9.27311e-07[&&NHX:dist=9.27310547059e-07:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout:annotation_references=_Reference_title_'Diversification in the northern neotropics_ mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU445367.1_f0:db_xref=GI_167508655:source_haplotype=AE-7:protein_id=ABZ81534.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura pectinata:annotation_gi=167508654:source_db_xref=taxon_496808:name=EU445367.1_f0:annotation_accessions=_'EU445367'_:source_feature_id=EU445367.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura pectinata:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:annotation_sequence_version=1],EU250312.1_f0:9.27311e-07[&&NHX:dist=9.27310547059e-07:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout:annotation_references=_Reference_title_'Diversification in the northern neotropics_ mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura hemilopha:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU250312.1_f0:db_xref=GI_167508619:source_haplotype=AE-3:protein_id=ABZ81516.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura hemilopha:annotation_gi=167508618:source_db_xref=taxon_51210:name=EU250312.1_f0:annotation_accessions=_'EU250312'_:source_feature_id=EU250312.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura hemilopha:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:annotation_sequence_version=1])0:9.27311e-07[&&NHX:support=0.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout])0:9.27311e-07[&&NHX:support=0.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout])0:9.27311e-07[&&NHX:support=0.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout])0:9.27311e-07[&&NHX:support=0.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout])0:9.27311e-07[&&NHX:support=0.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout])0:9.27311e-07[&&NHX:support=0.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout])80:9.27311e-07[&&NHX:support=80.0:dist=9.27310547059e-07:name=NoName:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout],EU250323.1_f0:9.27311e-07[&&NHX:dist=9.27310547059e-07:tree_method_id=323661413757398.84_alpha_enolase@MafftLinsi@gappyout:annotation_references=_Reference_title_'Diversification in the northern neotropics_ mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=23-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura hemilopha:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU250323.1_f0:db_xref=GI_167508641:source_haplotype=AE-14:protein_id=ABZ81527.1:product=alpha enolase:annotation_data_file_division=VRT:translation=DFKSPDDPSRYISADELGDLYQSFVRDYP:source_organism=Ctenosaura hemilopha:annotation_gi=167508640:source_db_xref=taxon_51210:name=EU250323.1_f0:annotation_accessions=_'EU250323'_:source_feature_id=EU250323.1_source:GC_content=54.5454545455:annotation_source=Ctenosaura hemilopha:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:annotation_sequence_version=1]);






MT-ND1
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_MT-ND1@MafftLinsi@gappyout

newick format

((AF049857.1_f0:1.7705,AF528721.1_f0:0.23589)62:0.558866,((GQ502764.1_f0:0.0738852,U82687.1_f0:1.25337e-06)44:1.25337e-06,(GQ502763.1_f0:0.709139,(AJ278511.2_f2:1.25337e-06,NC_002793.1_f2:1.25337e-06)71:1.25337e-06)57:0.357541)62:0.558866);


nhx format

(AJ278511.2_f2:1.25337e-06[&&NHX:dist=1.25337361972e-06:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Radiation of extant marsupials after the K/T boundary_ evidence from complete mitochondrial genomes'_ ...__ Reference_title_'Marsupial relationships and a timeline for marsupial radiation in South Gondwana'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=15-APR-2013:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=On May 20_ 2001 this sequence version replaced gi_13751149.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AJ278511.2_f2:db_xref=GI_13751150:GC_content=47.2049689441:protein_id=CAC37083.1:annotation_keywords=_'12S ribosomal RNA'_ '12S rRNA gene'_ '16S ribosomal RNA'_ '16S rRNA gene'_ 'ATP synthase F0 subunit 6'_ 'ATP synthase F0 subunit 8'_ 'atp6 gene'_ 'atp8 gene'_ 'complete genome'_ 'coxI gene'_ 'coxII gene'_ 'coxIII gene'_ 'cytb gene'_ 'cytochrome b'_ 'cytochrome c oxidase subunit I'_ 'cytochrome c oxidase subunit II'_ 'cytochrome c oxidase subunit III'_ 'NADH dehydrogenase subunit 1'_ 'NADH dehydrogenase subunit 2'_ 'NADH dehydrogenase subunit 3'_ 'NADH dehydrogenase subunit 4'_ 'NADH dehydrogenase subunit 4L'_ 'NADH dehydrogenase subunit 5'_ 'NADH dehydrogenase subunit 6'_ 'NADH1 gene'_ 'NADH2 gene'_ 'NADH3 gene'_ 'NADH4 gene'_ 'NADH4L gene'_ 'NADH5 gene'_ 'NADH6 gene'_:product=NADH dehydrogenase subunit 1:annotation_data_file_division=VRT:translation=MPNLLNHIINPLTYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPVRPSSASPTLFILTPTLALFIALSIWTPLPMPMMLADMNLGLLFMLALSSTAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSIVILSGGFSLKTLTITQEPAWLLLSSWPLTMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMMMNTLSATLFLSPGQTQPELFSMNLMTKATLLTIIFLWVRASYPRFRYDQLMHLLWKQFLPITLALCLWHTSLPISTFALPPIN:source_organism=Iguana iguana:annotation_gi=14161124:source_db_xref=taxon_8517:name=AJ278511.2_f2:annotation_accessions=_'AJ278511'_:source_feature_id=AJ278511.2_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=nadh1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=2],(((AF049857.1_f0:1.7705[&&NHX:note=TAA stop codon is completed by addition of 3' A residues to the mRNA:dist=1.77049766867:source_note=Locality of specimen_ Beach Flats_ Bahia de Los Angeles_ Baja California Norte_ Mexico:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout:transl_except=_pos_85_aa_TERM_:annotation_references=_Reference_title_'Molecular tests of phylogenetic taxonomies_ a general procedure and example using four subfamilies of the lizard family Iguanidae'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-MAR-2001:source_mol_type=genomic DNA:source_specimen_voucher=Museum of Vertebrate Zoology_ Berkeley_ California MVZ161172:annotation_organism=Dipsosaurus dorsalis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF049857.1_f0:db_xref=GI_4105727:GC_content=41.1764705882:protein_id=AAD02512.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 1:annotation_data_file_division=VRT:translation=QFLPITLALCLWHVSLPTSIFALPPQQT:source_organism=Dipsosaurus dorsalis:annotation_gi=4105726:source_db_xref=taxon_51217:name=AF049857.1_f0:annotation_accessions=_'AF049857'_:source_feature_id=AF049857.1_source:transl_table=2:annotation_source=mitochondrion Dipsosaurus dorsalis:gene=ND1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:annotation_sequence_version=1],AF528721.1_f0:0.23589[&&NHX:dist=0.235889904752:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships within Iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=10-SEP-2003:source_mol_type=genomic DNA:source_specimen_voucher=STLID' 920451_ SDID' 189337:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF528721.1_f0:db_xref=GI_33327586:GC_content=48.1481481481:protein_id=AAQ09123.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 1:annotation_data_file_division=VRT:translation=QFLPFTLAMCLWHVSLPISMFALPPQ:source_organism=Brachylophus fasciatus:annotation_gi=33327585:source_db_xref=taxon_46195:name=AF528721.1_f0:annotation_accessions=_'AF528721'_:source_feature_id=AF528721.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=ND1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:source_country=Fiji:annotation_sequence_version=1])62:1.11773[&&NHX:support=62.0:dist=1.11773182432:name=NoName:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout],(GQ502764.1_f0:0.0738852[&&NHX:dist=0.0738852435205:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=14-FEB-2013:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 161263:annotation_organism=Sauromalus australis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=GQ502764.1_f0:db_xref=GI_290790367:GC_content=51.1904761905:protein_id=ADD62722.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 1:annotation_data_file_division=VRT:translation=QFLPLTLALCLWHISLPTSTFALPPTN:source_organism=Sauromalus australis:annotation_gi=290790366:source_db_xref=taxon_65996:name=GQ502764.1_f0:annotation_accessions=_'GQ502764'_:source_feature_id=GQ502764.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus australis:gene=ND1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Baja California_ 2.1 mi W _by road_ El Arco:annotation_sequence_version=1],U82687.1_f0:1.25337e-06[&&NHX:dist=1.25337361972e-06:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=03-OCT-1998:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 144194_ Museum of Vertebrate Zoology_ University of California at Berkeley:annotation_organism=Sauromalus ater:annotation_comment=On Sep 16_ 1998 this sequence version replaced gi_1753305.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U82687.1_f0:db_xref=GI_3603153:GC_content=48.8095238095:protein_id=AAC62303.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 1:annotation_data_file_division=VRT:translation=QFLPLTLALCLWHISLPTSTFALPPIN:source_organism=Sauromalus ater:annotation_gi=3603152:source_db_xref=taxon_65995:name=U82687.1_f0:annotation_accessions=_'U82687'_ 'U71344'_:source_feature_id=U82687.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=ND1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Pitiquito_ 6 mi. SE _by Mex Hwy 2_ of Carborca_ Sonora:annotation_sequence_version=1])44:1.25337e-06[&&NHX:support=44.0:dist=1.25337361972e-06:name=NoName:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout])57:0.357541[&&NHX:support=57.0:dist=0.357541401748:name=NoName:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout],GQ502763.1_f0:0.709139[&&NHX:dist=0.709139259814:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=14-FEB-2013:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 162073:annotation_organism=Ctenosaura palearis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=GQ502763.1_f0:db_xref=GI_290790363:GC_content=41.6666666667:protein_id=ADD62719.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 1:annotation_data_file_division=VRT:translation=KFLPITLALCLWHTSFPISMFALPPIS:source_organism=Ctenosaura palearis:annotation_gi=290790362:source_db_xref=taxon_51211:name=GQ502763.1_f0:annotation_accessions=_'GQ502763'_:source_feature_id=GQ502763.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura palearis:gene=ND1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Guatemala_ Depto. Zacapa_ 22 km WSW _by road_ Rio Hondo:annotation_sequence_version=1])71:1.25337e-06[&&NHX:support=71.0:dist=1.25337361972e-06:name=NoName:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout],NC_002793.1_f2:1.25337e-06[&&NHX:dist=1.25337361972e-06:tree_method_id=323661413757398.84_MT-ND1@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=01-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=REVIEWED REFSEQ_ This record has been curated by NCBI staff. The_reference sequence was derived from AJ278511._COMPLETENESS_ full length.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=NC_002793.1_f2:db_xref=GI_14193046:GC_content=47.2049689441:protein_id=NP_115836.1:annotation_keywords=_'RefSeq'_:product=NADH dehydrogenase subunit 1:annotation_data_file_division=VRT:translation=MPNLLNHIINPLTYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPVRPSSASPTLFILTPTLALFIALSIWTPLPMPMMLADMNLGLLFMLALSSTAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSIVILSGGFSLKTLTITQEPAWLLLSSWPLTMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMMMNTLSATLFLSPGQTQPELFSMNLMTKATLLTIIFLWVRASYPRFRYDQLMHLLWKQFLPITLALCLWHTSLPISTFALPPIN:source_organism=Iguana iguana:annotation_gi=14193045:source_db_xref=taxon_8517:name=NC_002793.1_f2:annotation_accessions=_'NC_002793'_:source_feature_id=NC_002793.1_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=ND1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1]);






Amcr-UB
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_Amcr-UB@MafftLinsi@gappyout

newick format

(EU604310.1_f0:0.0189183,((EU604308.1_f0:0.0128145,EU604309.1_f0:0.0139757)80:0.0226439,(EU604312.1_f0:0.000958236,EU604311.1_f0:7.31688e-07)20:0.010112)1:0.0189183);


nhx format

((EU604308.1_f0:0.0128145[&&NHX:dist=0.0128145343887:tree_method_id=323661413757398.84_Amcr-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Amblyrhynchus cristatus:prot_degen_prop=0.0:source_isolate=M1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604308.1_f0:db_xref=GI_188501719:allele=Amcr-UB*01:GC_content=54.9399815328:annotation_gi=188501718:protein_id=ACD54828.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGLPWGGLLLFAAFFLGSCLGSSPHSLRYFVTGVSDPGREVPRFFSVGYVDDQQFVSYDPNARRRFPTVPWMTEVDKDDPQYWERNSQAVRNAEQVFRVGLVTLRKYYNQSGGLHTWQWMYGCELRKDGSKGGHMQFAYDGRDYISLDKETLTWTAADVPAQNTKRKWEAEPAIAQGDKAYLEETCIEWLERYLGYGNKTLLRREPPEVKVAHKADDDNMETLICRVGGFYPKEIDISWTKDGKNWMQDTFHGLVSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIITCVVGVVLLVAVIVGTAVYIKKRRDGYKAASTSDQGSNSSGKGSADAIQRA:source_organism=Amblyrhynchus cristatus:source_clone=1:source_db_xref=taxon_51208:name=EU604308.1_f0:annotation_accessions=_'EU604308'_:source_feature_id=EU604308.1_source:annotation_source=Amblyrhynchus cristatus:gene=Amcr-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Amblyrhynchus'_:annotation_sequence_version=1],EU604309.1_f0:0.0139757[&&NHX:dist=0.0139756961499:tree_method_id=323661413757398.84_Amcr-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Amblyrhynchus cristatus:prot_degen_prop=0.0:source_isolate=M1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604309.1_f0:db_xref=GI_188501721:allele=Amcr-UB*02:GC_content=54.3859649123:annotation_gi=188501720:protein_id=ACD54829.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGLPWGGLLLFAAFFLGSCLGSSPHSLRYFYTGVSEPGQEVPQFFLVGYVDDQQFVSYDPNTRRHFPTVPWMTEVDKDDPQYWEWNSQAARNAEQTFRVSLVTLRKYYNQSGGLHTWQLMYGCELRKDGSKGGQVQYAYDGRDYISLDKETLTWTAADVPAQNTKRKWEADPAFAQGRKAYLEETCIEWLERYLGYGNKTLLRREPPEVKVAHKADDDNMETLICRVGGFYPKEIDISWTKDGKNWMQDTFHGLVSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIITCVVGVVLLVAVIVGTAMYIKKRRDGYKAASTSDQGSNSSGKGSADAIQQA:source_organism=Amblyrhynchus cristatus:source_clone=2:source_db_xref=taxon_51208:name=EU604309.1_f0:annotation_accessions=_'EU604309'_:source_feature_id=EU604309.1_source:annotation_source=Amblyrhynchus cristatus:gene=Amcr-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Amblyrhynchus'_:annotation_sequence_version=1])80:0.0226439[&&NHX:support=80.0:dist=0.0226439462939:name=NoName:tree_method_id=323661413757398.84_Amcr-UB@MafftLinsi@gappyout],(EU604312.1_f0:0.000958236[&&NHX:dist=0.000958236109641:tree_method_id=323661413757398.84_Amcr-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Amblyrhynchus cristatus:prot_degen_prop=0.0:source_isolate=M1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604312.1_f0:db_xref=GI_188501727:allele=Amcr-UB*0402:GC_content=55.4337899543:annotation_gi=188501726:protein_id=ACD54832.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGPPRGPVSFLAAAAAACLLERCLGSSPHSLRYFFTGVSEPGQEVPRFFLVGYVDDQQFVSYDPNTRRHFPTVPWMTEVDKDDPQYWEWNSQTARNAEQTFRVGLVTARKYYNQSGGFHTVQWMFGCELRKDGSKGGHMQYAYDGRDYISLDKETLTWTAADVPAQNTKRKWEAEPAFAQGYKAYLEDECIEWLERYLGYGNKTLLRREPPEVKVAHKADDDNMETLICRVGGFYPKEIDISWTKDGKNWMQDTFHGLVSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIITCVVGVVLLVAVIVGTAVYIKKRRDGYKAASTSDQGSNSSGKGSADAIQQA:source_organism=Amblyrhynchus cristatus:source_clone=5:source_db_xref=taxon_51208:name=EU604312.1_f0:annotation_accessions=_'EU604312'_:source_feature_id=EU604312.1_source:annotation_source=Amblyrhynchus cristatus:gene=Amcr-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Amblyrhynchus'_:annotation_sequence_version=1],EU604311.1_f0:7.31688e-07[&&NHX:dist=7.31688177372e-07:tree_method_id=323661413757398.84_Amcr-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Amblyrhynchus cristatus:prot_degen_prop=0.0:source_isolate=M1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604311.1_f0:db_xref=GI_188501725:allele=Amcr-UB*0401:GC_content=55.5251141553:annotation_gi=188501724:protein_id=ACD54831.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGPPRGPVSFLAAAAAACLLERCLGSSPHSLRYFFTGVSEPGQEVPRFFLVGYVDDQQFVSYDPNTRRHFPTVPWMTEVDKDDPQYWEWNSQTARNAEQAFRVGLVTARKYYNQSGGFHTVQWMFGCELRKDGSKGGHMQYAYDGRDYISLDKETLTWTAADVPAQNTKRKWEAEPAFAQGYKAYLEDECIEWLERYLGYGNKTLLRREPPEVKVAHKADDDNMETLICRVGGFYPKEIDISWTKDGKNWMQDTFHGLVSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIITCVVGVVLLVAVIVGTAVYIKKRRDGYKAASTSDQGSNSSGKGSADAIQQA:source_organism=Amblyrhynchus cristatus:source_clone=4:source_db_xref=taxon_51208:name=EU604311.1_f0:annotation_accessions=_'EU604311'_:source_feature_id=EU604311.1_source:annotation_source=Amblyrhynchus cristatus:gene=Amcr-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Amblyrhynchus'_:annotation_sequence_version=1])20:0.010112[&&NHX:support=20.0:dist=0.0101119962454:name=NoName:tree_method_id=323661413757398.84_Amcr-UB@MafftLinsi@gappyout],EU604310.1_f0:0.0378366[&&NHX:dist=0.0378366248054:tree_method_id=323661413757398.84_Amcr-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Amblyrhynchus cristatus:prot_degen_prop=0.0:source_isolate=M1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604310.1_f0:db_xref=GI_188501723:allele=Amcr-UB*03:GC_content=54.8858447489:annotation_gi=188501722:protein_id=ACD54830.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGPPRGPVSFLAAAAAACLLERCLGSSPHSLRYFVTSVSDPGREVPRFFYVGYVDNQQFVSYDPNARRSLPKVPWMTEVDKDDPQYWERNSDNMKNAEQAFRVGLVNVRKYYNQSGGFHTLQRMYGCELRKDGSKGGYFQDAYDGRDYISLDKETLTWTAADVPAQNTKRKWEAEPAFAQGYKAYLEETCIEWLERYLGYGNKTLLRREPPEVKVAHKADDDNMETLICRVGGFYPKEIDISWTKDGKNWMQDTFHGLVSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIITCVVGVVLLVAVIVGTAVYIKKRRDGYKAASTSDQGSNSSGKGSADAIQRA:source_organism=Amblyrhynchus cristatus:source_clone=3:source_db_xref=taxon_51208:name=EU604310.1_f0:annotation_accessions=_'EU604310'_:source_feature_id=EU604310.1_source:annotation_source=Amblyrhynchus cristatus:gene=Amcr-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Amblyrhynchus'_:annotation_sequence_version=1]);






NT3
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_NT3@MafftLinsi@gappyout

newick format

(EU108022.1_f0:0.213641,((HM352522.1_f0:1.14291e-06,HM352521.1_f0:1.14291e-06)100:0.0105512,(((HM352523.1_f0:1.14291e-06,HM352524.1_f0:1.14291e-06)100:0.0020886,(GQ853278.1_f0:0.00888294,FJ434062.1_f0:0.00839008)24:1.14291e-06)60:0.00208766,((HM352525.1_f0:1.14291e-06,(HM352527.1_f0:1.14291e-06,HM352526.1_f0:1.14291e-06)95:1.14291e-06)79:1.14291e-06,(HM352528.1_f0:0.00417661,(HM352530.1_f0:1.14291e-06,HM352529.1_f0:0.00626921)96:0.00417971)85:0.0021128)83:0.00208843)61:1.14291e-06)1:0.213641);


nhx format

(HM352530.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352530.1_f0:db_xref=GI_298205415:source_haplotype=SA1:protein_id=ADI61914.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDTIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVKNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Iguana iguana:annotation_gi=298205414:source_db_xref=taxon_8517:name=HM352530.1_f0:annotation_accessions=_'HM352530'_:source_feature_id=HM352530.1_source:GC_content=41.5132924335:annotation_source=Iguana iguana _common iguana_:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1],((((HM352527.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Sauromalus klauberi:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352527.1_f0:db_xref=GI_298205409:GC_content=41.5132924335:protein_id=ADI61911.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDTIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Sauromalus klauberi:annotation_gi=298205408:source_db_xref=taxon_767358:name=HM352527.1_f0:annotation_accessions=_'HM352527'_:source_feature_id=HM352527.1_source:annotation_source=Sauromalus klauberi _Spotted chuckwalla_:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:annotation_sequence_version=1],HM352526.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Sauromalus australis:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352526.1_f0:db_xref=GI_298205407:GC_content=41.5132924335:protein_id=ADI61910.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDTIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Sauromalus australis:annotation_gi=298205406:source_db_xref=taxon_65996:name=HM352526.1_f0:annotation_accessions=_'HM352526'_:source_feature_id=HM352526.1_source:annotation_source=Sauromalus australis:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:annotation_sequence_version=1])95:1.14291e-06[&&NHX:support=95.0:dist=1.1429089773e-06:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout],HM352525.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352525.1_f0:db_xref=GI_298205405:GC_content=41.5132924335:protein_id=ADI61909.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDTIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Sauromalus ater:annotation_gi=298205404:source_db_xref=taxon_65995:name=HM352525.1_f0:annotation_accessions=_'HM352525'_:source_feature_id=HM352525.1_source:annotation_source=Sauromalus ater:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:annotation_sequence_version=1])79:1.14291e-06[&&NHX:support=79.0:dist=1.1429089773e-06:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout],((EU108022.1_f0:0.427283[&&NHX:dist=0.42728274236:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships within the Xantusiidae _Squamata__ using trees to address evolutionary questions at multiple levels'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=05-AUG-2010:source_mol_type=genomic DNA:source_specimen_voucher=JAG 5/21/01:annotation_organism=Dipsosaurus dorsalis:prot_degen_prop=0.0:source_isolate=I2:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU108022.1_f0:db_xref=GI_164613624:GC_content=56.2624254473:protein_id=ABY64040.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=AYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLG:source_organism=Dipsosaurus dorsalis:annotation_gi=164613623:source_db_xref=taxon_51217:name=EU108022.1_f0:annotation_accessions=_'EU108022'_:source_feature_id=EU108022.1_source:annotation_source=Dipsosaurus dorsalis:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:source_country=USA_ California_ San Bernadino:annotation_sequence_version=1],(HM352522.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352522.1_f0:db_xref=GI_298205399:GC_content=41.717791411:protein_id=ADI61906.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLSEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDAIEPYTDGNDNMKLDFQPLISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Conolophus subcristatus:annotation_gi=298205398:source_db_xref=taxon_31140:name=HM352522.1_f0:annotation_accessions=_'HM352522'_:source_feature_id=HM352522.1_source:annotation_source=Conolophus subcristatus:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1],HM352521.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Conolophus pallidus:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352521.1_f0:db_xref=GI_298205397:GC_content=41.717791411:protein_id=ADI61905.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLSEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDAIEPYTDGNDNMKLDFQPLISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Conolophus pallidus:annotation_gi=298205396:source_db_xref=taxon_57097:name=HM352521.1_f0:annotation_accessions=_'HM352521'_:source_feature_id=HM352521.1_source:annotation_source=Conolophus pallidus:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1])100:0.0105512[&&NHX:support=100.0:dist=0.0105511769805:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout])61:1.14291e-06[&&NHX:support=61.0:dist=1.1429089773e-06:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout],((HM352523.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Cyclura ricordi:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352523.1_f0:db_xref=GI_298205401:GC_content=41.1042944785:protein_id=ADI61907.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDAIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Cyclura ricordi:annotation_gi=298205400:source_db_xref=taxon_51215:name=HM352523.1_f0:annotation_accessions=_'HM352523'_:source_feature_id=HM352523.1_source:annotation_source=Cyclura ricordi:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1],HM352524.1_f0:1.14291e-06[&&NHX:dist=1.1429089773e-06:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Cyclura carinata:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352524.1_f0:db_xref=GI_298205403:GC_content=41.1042944785:protein_id=ADI61908.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDAIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Cyclura carinata:annotation_gi=298205402:source_db_xref=taxon_118677:name=HM352524.1_f0:annotation_accessions=_'HM352524'_:source_feature_id=HM352524.1_source:annotation_source=Cyclura carinata:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1])100:0.0020886[&&NHX:support=100.0:dist=0.00208859869593:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout],(GQ853278.1_f0:0.00888294[&&NHX:dist=0.00888293504002:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Tracing the origins of iguanid lizards and boine snakes of the pacific'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=24-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Cyclura pinguis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=GQ853278.1_f0:db_xref=GI_289190217:GC_content=41.4937759336:protein_id=ADC93313.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=GIQSTNMDQRGLPEESINSLIIKLIQADVLKNKISKQMVDVKNNVQNTMKKIDAIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDSTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVT:source_organism=Cyclura pinguis:annotation_gi=289190216:source_db_xref=taxon_118683:name=GQ853278.1_f0:annotation_accessions=_'GQ853278'_:source_feature_id=GQ853278.1_source:annotation_source=Cyclura pinguis:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1],FJ434062.1_f0:0.00839008[&&NHX:dist=0.00839008190947:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Snakes _Serpentes_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=31-OCT-2009:source_mol_type=genomic DNA:annotation_organism=Cyclura nubila:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=FJ434062.1_f0:db_xref=GI_238822578:GC_content=40.8906882591:protein_id=ACR58941.1:product=NT3:annotation_data_file_division=VRT:translation=MDQRSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDAIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVMNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Cyclura nubila:annotation_gi=238822577:source_db_xref=taxon_51214:name=FJ434062.1_f0:annotation_accessions=_'FJ434062'_:source_feature_id=FJ434062.1_source:annotation_source=Cyclura nubila:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1])24:1.14291e-06[&&NHX:support=24.0:dist=1.1429089773e-06:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout])60:0.00208766[&&NHX:support=60.0:dist=0.00208766270134:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout])83:0.00208843[&&NHX:support=83.0:dist=0.00208843419227:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout])85:0.0021128[&&NHX:support=85.0:dist=0.0021128047802:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout],HM352528.1_f0:0.00417661[&&NHX:dist=0.00417661059269:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Iguana delicatissima:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352528.1_f0:db_xref=GI_298205411:GC_content=41.5132924335:protein_id=ADI61912.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKMDTIEPYTDGNDNMKLDFQPVISIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGDSEVKNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Iguana delicatissima:annotation_gi=298205410:source_db_xref=taxon_51191:name=HM352528.1_f0:annotation_accessions=_'HM352528'_:source_feature_id=HM352528.1_source:annotation_source=Iguana delicatissima:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1])96:0.00417971[&&NHX:support=96.0:dist=0.00417971014882:name=NoName:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout],HM352529.1_f0:0.00626921[&&NHX:dist=0.00626921071781:tree_method_id=323661413757398.84_NT3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352529.1_f0:db_xref=GI_298205413:source_haplotype=CA1:protein_id=ADI61913.1:product=neurotrophin-3:annotation_data_file_division=VRT:translation=RSLPEESINSLIIKLIQADILKNKISKQMVDVKNNVQNTMKKIDTIEPYTDGNDNMKSDFQPVLSIETELLRQQKHYSSPRVLLSDNTPLEPPPLYLMEDYIGGSEVKNRTSRQRRFAENKSHRGEYSVCDSESRWVTDKSSAIDIRGHQVTVLGEIKMGPS:source_organism=Iguana iguana:annotation_gi=298205412:source_db_xref=taxon_8517:name=HM352529.1_f0:annotation_accessions=_'HM352529'_:source_feature_id=HM352529.1_source:GC_content=41.717791411:annotation_source=Iguana iguana _common iguana_:gene=NT3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1]);






Cosu-UB
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_Cosu-UB@MafftLinsi@gappyout

newick format

(EU604316.1_f0:0.0242108,(EU604315.1_f0:0.0424992,(EU604314.1_f0:0.00186329,EU604313.1_f0:9.60994e-07)0:0.0276506)1:0.0242108);


nhx format

(EU604316.1_f0:0.0484217[&&NHX:dist=0.0484216917553:tree_method_id=323661413757398.84_Cosu-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Conolophus subcristatus:prot_degen_prop=0.0:source_isolate=L1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604316.1_f0:db_xref=GI_188501735:allele=Cosu-UB*03:GC_content=55.1565377532:annotation_gi=188501734:protein_id=ACD54836.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGLPRGPGLFLAAAAACLLGSCLGSSPHSVRYFYTAVSDPGQEVPQFFIVGYMDDQRFVYYDANSGRVRPAVPWMTEVDKDDPQYWEWNSQAAQNAEQVFRGNLVTARKYYNQSGGVHTLQVMYSCELRKDGSKGGHVQHAYDGRDYISFDKETLTWTAADVPAQNTKRKWEAESAIAQRDKAYLEVECIEWLQRYLGYGNKTLLRTEPPQVKVTRKADDDNTETLICQVGGFYPKEIDIAWKKDGEVQVEDTFHGLLSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIIACVVGAVLVVTVIAGTAVYIIKKRRDGYKAASTSDQGSNSSGKGSAVPI:source_organism=Conolophus subcristatus:source_clone=4:source_db_xref=taxon_31140:name=EU604316.1_f0:annotation_accessions=_'EU604316'_:source_feature_id=EU604316.1_source:annotation_source=Conolophus subcristatus:gene=Cosu-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1],(EU604314.1_f0:0.00186329[&&NHX:dist=0.00186329158808:tree_method_id=323661413757398.84_Cosu-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Conolophus subcristatus:prot_degen_prop=0.0:source_isolate=L1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604314.1_f0:db_xref=GI_188501731:allele=Cosu-UB*0102:GC_content=54.2357274401:annotation_gi=188501730:protein_id=ACD54834.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGLPRGPGLFLAAAAACLLGSCLGSSPHSLRYFYTAVSEPGQEVPQFFSVGYVDDQQFVSYDPDTGRHFPTVPWMTEVDKDDPQYWERTSQVIWNAEQVFRVDLVNVPKYYNQSGGLHILQLMYGCELRKDGSKGGYGQYAYDGRDYISFDKETLTWTAADGPAQITKRKWDPNSALNQQWKAYLEAECIEWLERHLGYGKKTLLRTEPPQVKVTRKADDDNTETLICQVGGFYPKEIDIAWKKDGEVQVEDTFHGLLSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIIACVVGAVLVVTVIAGTAVYIIKKRRDGYKAASTSDQGSNSSGKGSAVPI:source_organism=Conolophus subcristatus:source_clone=2:source_db_xref=taxon_31140:name=EU604314.1_f0:annotation_accessions=_'EU604314'_:source_feature_id=EU604314.1_source:annotation_source=Conolophus subcristatus:gene=Cosu-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1],EU604313.1_f0:9.60994e-07[&&NHX:dist=9.60994126846e-07:tree_method_id=323661413757398.84_Cosu-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Conolophus subcristatus:prot_degen_prop=0.0:source_isolate=L1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604313.1_f0:db_xref=GI_188501729:allele=Cosu-UB*0101:GC_content=54.0515653775:annotation_gi=188501728:protein_id=ACD54833.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGLPRGPGLFLAAAAACLLGSCLGSSPHSLRYFYTAVSEPGQEVPQFFSVGYVDDQQFVSYDPDTRRHFPTVPWMTEVDKDDPQYWERTSQVIWNAEQVFRVDLVNVPKYYNQSGGLHILQLMYGCELRKDGSKGGYGQYAYDGRDYISFDKETLTWTAADGPAQITKRKWDPNSALNQQWKAYLEAECIEWLERYLGYGKKTLLRTEPPQVKVTRKADDDNTETLICQVGGFYPKEIDIAWKKDGEVQVEDTFHGLLSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIIACVVGAVLVVTVIAGTAVYIIKKRRDGYKAASTSDQGSNSSGKGSAVPI:source_organism=Conolophus subcristatus:source_clone=1:source_db_xref=taxon_31140:name=EU604313.1_f0:annotation_accessions=_'EU604313'_:source_feature_id=EU604313.1_source:annotation_source=Conolophus subcristatus:gene=Cosu-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1])0:0.0276506[&&NHX:support=0.0:dist=0.0276506139724:name=NoName:tree_method_id=323661413757398.84_Cosu-UB@MafftLinsi@gappyout],EU604315.1_f0:0.0424992[&&NHX:dist=0.0424992282893:tree_method_id=323661413757398.84_Cosu-UB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Species-specific evolution of class I MHC genes in iguanas _order_ Squamata_ subfamily_ Iguaninae_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-JUL-2008:source_mol_type=mRNA:annotation_organism=Conolophus subcristatus:prot_degen_prop=0.0:source_isolate=L1:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU604315.1_f0:db_xref=GI_188501733:allele=Cosu-UB*02:GC_content=53.4069981584:annotation_gi=188501732:protein_id=ACD54835.1:product=MHC class I antigen:annotation_data_file_division=VRT:translation=MGLPRGPGLFLAAAAACLLGSCLGSSPHSMRYFITGVSDPGQEVPQFFYVGYVDDQQFVSYDPNTRRSLPKVPWITKVDKDDPQYWEWNSDGMKNAEQVFRGNLVTARKYYNQSGGLHTWQMMYGCELRKDGSKGGYRQYGYDGRNYISFDKETLTWTAADVPAQNTKRKWDPMSEYNQHRKAYLEETCIEWLQRYLGYGKKTLLRTEPPQVKVTRKADDDNAETLICQVGGFYPKEIDIAWKKDGEVQVEDTFHGLLSPNSDGTYYTWWSIKIDPKDRERYKCRVEHDGLEKPLDLAWEEPVSASNLGLIIACVVGAVLVVTVIAGTAVYIIKKRRDGYKAASTSDQGSNSSGKGSAVPI:source_organism=Conolophus subcristatus:source_clone=3:source_db_xref=taxon_31140:name=EU604315.1_f0:annotation_accessions=_'EU604315'_:source_feature_id=EU604315.1_source:annotation_source=Conolophus subcristatus:gene=Cosu-UB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1]);






RAG1
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_RAG1@MafftLinsi@gappyout

newick format

(DQ119625.1_f0:0.524018,((FJ356747.1_f0:1.17767e-06,EU108530.1_f0:1.17767e-06)63:0.0156918,(JF806211.1_f0:0.019031,(AY988026.1_f0:1.17767e-06,JF806203.1_f0:1.17767e-06)82:0.0190064)37:0.00769997)1:0.524018);


nhx format

(AY988026.1_f0:1.17767e-06[&&NHX:dist=1.17767427393e-06:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Vicariant origin of malagasy reptiles supports late cretaceous antarctic land bridge'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=11-AUG-2009:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.00115874855156:annotation_keywords=_''_:feature_id=AY988026.1_f0:db_xref=GI_66276495:GC_content=44.8435689455:protein_id=AAY44233.1:product=recombination activating protein 1:annotation_data_file_division=VRT:translation=IFQPLHALRTAEKSLLPGYHPFEWKPPLKNVSSNTEVGIIDGLSGIQCLVDDYPVDTIAKRFRYDAALVSALMDMEEDILEGLKNQDLDDYFKGPFTVVIKESCDGMGDVSEKHGCGPAVPEKAVRFSFTLMSISVTHDNASIRVFEESKPNSELCCKPLCLMLADESDHETLTAILSPLVAEKEAMKHSVLILDMAGIPRTFKFIFRGTGYDEKLVREVEGLEASGSTYICTLCDATRQEASQNLILHSITRSHAENLERYEVWRSNPYHETVDELRDRVKGVSAKP:source_organism=Brachylophus fasciatus:annotation_gi=66276494:source_db_xref=taxon_46195:name=AY988026.1_f0:annotation_accessions=_'AY988026'_:source_feature_id=AY988026.1_source:annotation_source=Brachylophus fasciatus _banded iguana_:gene=RAG1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1],(JF806211.1_f0:0.019031[&&NHX:dist=0.0190310036216:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeny of iguanian lizards inferred from 29 nuclear loci_ and a comparison of concatenated and species-tree approaches for an ancient_ rapid radiation'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=22-SEP-2011:source_mol_type=genomic DNA:source_specimen_voucher=TWR 1147:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.00191387559809:annotation_keywords=_''_:feature_id=JF806211.1_f0:db_xref=GI_336110500:GC_content=44.1148325359:protein_id=AEI17018.1:product=recombination activating protein 1:annotation_data_file_division=VRT:translation=GRQIFQPLHALRTAEKSLLPGYHSFEWKPPLKNVSSNTEVGIIDGLSGIQYSVDDYPVDTIAKRFRYDAALVSALMDMEEDILEGLKSQDLDDYFKGPFTVVIKESCDGMGDVSEKHGCGPAVPEKAVRFSFTLMSISVTHDNASIRIFEENKPNSELCCKPLCLMLADESDHETLTAILSPLVAEREAMKDSVLILDMAGIPRTFKFIFRGTGYDEKLVREVEGLEASGSTYICTLCDATRQEASQNLILHSITRSHAENLERYEVWRSNPYHETVDELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQFEIGEVYKNPDASREERKRWQSTLDKHLRK:source_organism=Sauromalus ater:annotation_gi=336110499:source_db_xref=taxon_65995:name=JF806211.1_f0:annotation_accessions=_'JF806211'_:source_feature_id=JF806211.1_source:annotation_source=Sauromalus ater:gene=RAG1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:annotation_sequence_version=1],(DQ119625.1_f0:1.04804[&&NHX:dist=1.04803612499:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Early evolution of the venom system in lizards and snakes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=27-JAN-2006:source_mol_type=genomic DNA:annotation_organism=Cyclura nubila:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=DQ119625.1_f0:db_xref=GI_74099725:GC_content=41.9607843137:protein_id=AAZ99071.1:product=RAG1:annotation_data_file_division=VRT:translation=AAEFYKIFQFEIGEVYKNPDASREERKRWQSTLDKHLRKKMNLKPVTRMNGNFARKLMTKDTVEAVCELIKSEERQEALRELMDLYLKMKPVWRSSCPTKECPELVCQYSFNSQRFAELLATKFRYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRR:source_organism=Cyclura nubila:annotation_gi=74099724:source_db_xref=taxon_51214:name=DQ119625.1_f0:annotation_accessions=_'DQ119625'_:source_feature_id=DQ119625.1_source:annotation_source=Cyclura nubila:gene=RAG1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1],(FJ356747.1_f0:1.17767e-06[&&NHX:dist=1.17767427393e-06:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1_ a new phylogenetic marker for reptiles'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=13-JAN-2009:source_mol_type=genomic DNA:source_specimen_voucher=CAS 208708:annotation_organism=Dipsosaurus dorsalis:prot_degen_prop=0.00311526479751:support=1.0:codon_start=2:nuc_degen_prop=0.00172950536147:annotation_keywords=_''_:feature_id=FJ356747.1_f0:db_xref=GI_219881572:GC_content=43.4797647873:protein_id=ACL51945.1:product=recombination activating protein 1:annotation_data_file_division=VRT:translation=KVRSLEKPLPDDSHLANNNKGKVSTSLDKVIEEKTEMVALTSPPLFERDTELNNGVQTIDESAFHMSQREADAHXANLQHLCRICGGSFKTDPYKRSHPVHGPIDDETQALLRKKEKKATSWPDLLAKVFKTDVKADIDTIHPTKFCHQCWTVVQKKLSNSLCEPFFPRKAPVEWHXHASSCDVCGTSSRGVKRKKQIINPQLSKKLRLVARXARKIRQVKNPKQVNQKSLMKKFANCKKIHLSTKILAVDYPADFVKSISCQICDHILADPLETTCKHLFCRACILKCLKVMGSYCPACRYPCFPTDLVSPVKSFLSILNSLPVICPVNDCQEEICLGKYCHHISRHKEVENKEGYVYVNKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFAEKEEGGDVKSVCLTLFLLALRARNEHRQADELEAIMQGKGSGLHPAVCLAIRVNTFLSCSQYHKMYRTVKAVTGRQIFQPLHALRTAEKSLLPGYHPFEWKPPLKNVSSKTEVGIIDGLSGIQHSVDDYPVDTIAKRFRYDAALVSALMDMEEDILEGLKSQDLDDYFKGPFTVVIKESCDGMGDVSEKHGCGPAVPEKAVRFSFTLMSISVTHDKASIRIFEESKPNSELCCKPLCLMLADESDHETLTAILSPLVAEREAMKDSVLILEMAGIPRTFKFIFRGTGYDEKLVREVEGLEASGSTYICTLCDATRQEASQNFILHSITRSHAENLERYEVWRSNPYHETVDELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQFEIGEVYKTPDVSREERKRWQSTLDKHLRKKMNLKPVTRMNGNFARKLMTKETVEAVCELIKGEERQEALRELMDLYLKMKPVWRSSCPTKECPELVCQYSFNSQRFAELLATKFRYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKMNARQSKCYEMEDVLK:source_organism=Dipsosaurus dorsalis:annotation_gi=219881571:source_db_xref=taxon_51217:name=FJ356747.1_f0:annotation_accessions=_'FJ356747'_:source_feature_id=FJ356747.1_source:annotation_source=Dipsosaurus dorsalis:gene=RAG1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:source_country=USA_ Coachella Valley_ Indio Hills_ Varner Rd_ 3 mi NW of Thousand Palms_ Riverside Co._ California:annotation_sequence_version=1],EU108530.1_f0:1.17767e-06[&&NHX:dist=1.17767427393e-06:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships within the Xantusiidae _Squamata__ using trees to address evolutionary questions at multiple levels'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=05-AUG-2010:source_mol_type=genomic DNA:source_specimen_voucher=JAG 5/21/01:annotation_organism=Dipsosaurus dorsalis:prot_degen_prop=0.0:source_isolate=I2:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU108530.1_f0:db_xref=GI_158955246:GC_content=45.0909090909:protein_id=ABW84580.1:product=recombination activating protein 1:annotation_data_file_division=VRT:translation=AEKSLLPGYHPFEWKPPLKNVSSKTEVGIIDGLSGIQHSVDDYPVDTIAKRFRYDAALVSALMDMEEDILEGLKSQDLDDYFKGPFTVVIKESCDGMGDVSEKHGCGPAVPEKAVRFSFTLMSISVTHDKASIRIFEESKPNSELCCKPLCLMLADESDHETLTAILSPLVAEREAMKDSVLILEMAGIPRTFKFIFRGTGYDEKLVREVEGLEASGSTYICTLCDATRQEASQNFILHSITRSHAENLERYEVWRSNPYHETVDELRDRVKGVS:source_organism=Dipsosaurus dorsalis:annotation_gi=158955245:source_db_xref=taxon_51217:name=EU108530.1_f0:annotation_accessions=_'EU108530'_:source_feature_id=EU108530.1_source:annotation_source=Dipsosaurus dorsalis:gene=RAG1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:source_country=USA_ California_ San Bernadino:annotation_sequence_version=1])63:0.0156918[&&NHX:support=63.0:dist=0.015691780497:name=NoName:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout])37:0.00769997[&&NHX:support=37.0:dist=0.00769996992035:name=NoName:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout])82:0.0190064[&&NHX:support=82.0:dist=0.0190063987854:name=NoName:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout],JF806203.1_f0:1.17767e-06[&&NHX:dist=1.17767427393e-06:tree_method_id=323661413757398.84_RAG1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeny of iguanian lizards inferred from 29 nuclear loci_ and a comparison of concatenated and species-tree approaches for an ancient_ rapid radiation'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=22-SEP-2011:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0104895104895:support=1.0:codon_start=3:nuc_degen_prop=0.00580046403712:annotation_keywords=_''_:feature_id=JF806203.1_f0:db_xref=GI_336110484:GC_content=43.5034802784:protein_id=AEI17010.1:product=recombination activating protein 1:annotation_data_file_division=VRT:translation=KNVSSNXXVGIIDGLSGIQCLVDDYPVDTIAKRFRYDAALVSALMDMEEDILEGLKNQDLDDYFKGPFTVVIKESCDGMGDVSEKHGCGPAVPEKAVRFSFTLMSISVTHDNASIRVFEESKPNSELCCKPLCLMLADESDXETLTAILSPLVAEKEAMKHSVLILDMAGIPRTFKFIFRGTGYDEKLVREVEGLEASGSTYICTLCDATRQEASQNLILHSITRSHAENLERYEVWRSNPYHETVDELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQ:source_organism=Brachylophus fasciatus:annotation_gi=336110483:source_db_xref=taxon_46195:name=JF806203.1_f0:annotation_accessions=_'JF806203'_:source_feature_id=JF806203.1_source:annotation_source=Brachylophus fasciatus _banded iguana_:gene=RAG1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1]);






MT-CO1
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_MT-CO1@MafftLinsi@gappyout

newick format

(GQ502763.1_f2:0.0171708,((AF049857.1_f2:0.0341375,AF528721.1_f2:0.0341375)52:7.33036e-07,(NC_002793.1_f4:7.33036e-07,(AJ278511.2_f4:7.33036e-07,(GQ502764.1_f2:7.33036e-07,U82687.1_f2:7.33036e-07)25:7.33036e-07)25:7.33036e-07)26:7.33036e-07)1:0.0171708);


nhx format

(GQ502764.1_f2:7.33036e-07[&&NHX:dist=7.33036378993e-07:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=14-FEB-2013:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 161263:annotation_organism=Sauromalus australis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=GQ502764.1_f2:db_xref=GI_290790369:GC_content=46.6666666667:protein_id=ADD62724.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit I:annotation_data_file_division=VRT:translation=MSITRWFFST:source_organism=Sauromalus australis:annotation_gi=290790366:source_db_xref=taxon_65996:name=GQ502764.1_f2:annotation_accessions=_'GQ502764'_:source_feature_id=GQ502764.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus australis:gene=COI:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Baja California_ 2.1 mi W _by road_ El Arco:annotation_sequence_version=1],(AJ278511.2_f4:7.33036e-07[&&NHX:dist=7.33036378993e-07:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Radiation of extant marsupials after the K/T boundary_ evidence from complete mitochondrial genomes'_ ...__ Reference_title_'Marsupial relationships and a timeline for marsupial radiation in South Gondwana'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=15-APR-2013:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=On May 20_ 2001 this sequence version replaced gi_13751149.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AJ278511.2_f4:db_xref=GI_13751152:GC_content=47.2868217054:protein_id=CAC37085.1:annotation_keywords=_'12S ribosomal RNA'_ '12S rRNA gene'_ '16S ribosomal RNA'_ '16S rRNA gene'_ 'ATP synthase F0 subunit 6'_ 'ATP synthase F0 subunit 8'_ 'atp6 gene'_ 'atp8 gene'_ 'complete genome'_ 'coxI gene'_ 'coxII gene'_ 'coxIII gene'_ 'cytb gene'_ 'cytochrome b'_ 'cytochrome c oxidase subunit I'_ 'cytochrome c oxidase subunit II'_ 'cytochrome c oxidase subunit III'_ 'NADH dehydrogenase subunit 1'_ 'NADH dehydrogenase subunit 2'_ 'NADH dehydrogenase subunit 3'_ 'NADH dehydrogenase subunit 4'_ 'NADH dehydrogenase subunit 4L'_ 'NADH dehydrogenase subunit 5'_ 'NADH dehydrogenase subunit 6'_ 'NADH1 gene'_ 'NADH2 gene'_ 'NADH3 gene'_ 'NADH4 gene'_ 'NADH4L gene'_ 'NADH5 gene'_ 'NADH6 gene'_:product=cytochrome c oxidase subunit I:annotation_data_file_division=VRT:translation=MSITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTSINMKPPTMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYAGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGMIKWDAPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGYTLHHTWTKIQFGVMFAGVNMTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISLVAVIMMMFIIWEAFASKREILSLELTTTNLEWLHGCPPPYHTYEEPTYVQTTS:source_organism=Iguana iguana:annotation_gi=14161124:source_db_xref=taxon_8517:name=AJ278511.2_f4:annotation_accessions=_'AJ278511'_:source_feature_id=AJ278511.2_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=cox I:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=2],(((AF049857.1_f2:0.0341375[&&NHX:dist=0.0341375465422:source_note=Locality of specimen_ Beach Flats_ Bahia de Los Angeles_ Baja California Norte_ Mexico:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Molecular tests of phylogenetic taxonomies_ a general procedure and example using four subfamilies of the lizard family Iguanidae'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-MAR-2001:source_mol_type=genomic DNA:source_specimen_voucher=Museum of Vertebrate Zoology_ Berkeley_ California MVZ161172:annotation_organism=Dipsosaurus dorsalis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF049857.1_f2:db_xref=GI_4105729:GC_content=43.3333333333:protein_id=AAD02514.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit I:annotation_data_file_division=VRT:translation=MSITRWFFST:source_organism=Dipsosaurus dorsalis:annotation_gi=4105726:source_db_xref=taxon_51217:name=AF049857.1_f2:annotation_accessions=_'AF049857'_:source_feature_id=AF049857.1_source:transl_table=2:annotation_source=mitochondrion Dipsosaurus dorsalis:gene=COI:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:annotation_sequence_version=1],AF528721.1_f2:0.0341375[&&NHX:dist=0.034137546543:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships within Iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=10-SEP-2003:source_mol_type=genomic DNA:source_specimen_voucher=STLID' 920451_ SDID' 189337:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF528721.1_f2:db_xref=GI_33327588:GC_content=43.3333333333:protein_id=AAQ09125.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit I:inference=non-experimental evidence_ no additional details recorded:annotation_data_file_division=VRT:translation=MSITRWFFST:source_organism=Brachylophus fasciatus:annotation_gi=33327585:source_db_xref=taxon_46195:name=AF528721.1_f2:annotation_accessions=_'AF528721'_:source_feature_id=AF528721.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=COI:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:source_country=Fiji:annotation_sequence_version=1])52:7.33036e-07[&&NHX:support=52.0:dist=7.33036378993e-07:name=NoName:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout],GQ502763.1_f2:0.0343416[&&NHX:dist=0.034341640908:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=14-FEB-2013:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 162073:annotation_organism=Ctenosaura palearis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=GQ502763.1_f2:db_xref=GI_290790365:GC_content=43.3333333333:protein_id=ADD62721.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit I:annotation_data_file_division=VRT:translation=MSITRWFFST:source_organism=Ctenosaura palearis:annotation_gi=290790362:source_db_xref=taxon_51211:name=GQ502763.1_f2:annotation_accessions=_'GQ502763'_:source_feature_id=GQ502763.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura palearis:gene=COI:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Guatemala_ Depto. Zacapa_ 22 km WSW _by road_ Rio Hondo:annotation_sequence_version=1])26:7.33036e-07[&&NHX:support=26.0:dist=7.33036378993e-07:name=NoName:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout],NC_002793.1_f4:7.33036e-07[&&NHX:dist=7.33036378993e-07:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=01-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=REVIEWED REFSEQ_ This record has been curated by NCBI staff. The_reference sequence was derived from AJ278511._COMPLETENESS_ full length.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=NC_002793.1_f4:db_xref=GI_14193048:GC_content=47.2868217054:protein_id=NP_115838.1:annotation_keywords=_'RefSeq'_:product=cytochrome c oxidase subunit I:annotation_data_file_division=VRT:translation=MSITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTSINMKPPTMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYAGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGMIKWDAPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGYTLHHTWTKIQFGVMFAGVNMTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISLVAVIMMMFIIWEAFASKREILSLELTTTNLEWLHGCPPPYHTYEEPTYVQTTS:source_organism=Iguana iguana:annotation_gi=14193045:source_db_xref=taxon_8517:name=NC_002793.1_f4:annotation_accessions=_'NC_002793'_:source_feature_id=NC_002793.1_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=COX1:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1])25:7.33036e-07[&&NHX:support=25.0:dist=7.33036378993e-07:name=NoName:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout])25:7.33036e-07[&&NHX:support=25.0:dist=7.33036378993e-07:name=NoName:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout],U82687.1_f2:7.33036e-07[&&NHX:dist=7.33036378993e-07:tree_method_id=323661413757398.84_MT-CO1@MafftLinsi@gappyout:annotation_references=_Reference_title_'Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=03-OCT-1998:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 144194_ Museum of Vertebrate Zoology_ University of California at Berkeley:annotation_organism=Sauromalus ater:annotation_comment=On Sep 16_ 1998 this sequence version replaced gi_1753305.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U82687.1_f2:db_xref=GI_3603155:GC_content=46.6666666667:protein_id=AAC62305.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit I:annotation_data_file_division=VRT:translation=MSITRWFFST:source_organism=Sauromalus ater:annotation_gi=3603152:source_db_xref=taxon_65995:name=U82687.1_f2:annotation_accessions=_'U82687'_ 'U71344'_:source_feature_id=U82687.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=COI:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Pitiquito_ 6 mi. SE _by Mex Hwy 2_ of Carborca_ Sonora:annotation_sequence_version=1]);






BDNF
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_BDNF@MafftLinsi@gappyout

newick format

((GQ853275.1_f0:0.00626452,(AY987980.1_f0:1.117e-06,JF806018.1_f0:1.117e-06)99:0.00934989)74:0.00227235,(FJ433956.1_f0:0.00152956,(JF806026.1_f0:0.00305552,GQ853272.1_f0:0.00609167)32:1.117e-06)74:0.00227235);


nhx format

(JF806026.1_f0:0.00305552[&&NHX:dist=0.00305551666196:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeny of iguanian lizards inferred from 29 nuclear loci_ and a comparison of concatenated and species-tree approaches for an ancient_ rapid radiation'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=22-SEP-2011:source_mol_type=genomic DNA:source_specimen_voucher=TWR 1147:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=JF806026.1_f0:db_xref=GI_336110130:GC_content=49.4029850746:protein_id=AEI16833.1:product=brain-derived neurotrophic factor:annotation_data_file_division=VRT:translation=SCMKAAPMKEVSLRGQGSLAYPGLRTQGNLENLGGPNDATRGLTSLADTFEHVIEELLDEQQAVQPSKENKDADLYSSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSTSEWVTAAEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNSKGYTKEGCRGIDKRYWNSQCRTTQSYVRALTMDNKKRVGWRFIRIDTSC:source_organism=Sauromalus ater:annotation_gi=336110129:source_db_xref=taxon_65995:name=JF806026.1_f0:annotation_accessions=_'JF806026'_:source_feature_id=JF806026.1_source:annotation_source=Sauromalus ater:gene=BDNF:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:annotation_sequence_version=1],(FJ433956.1_f0:0.00152956[&&NHX:dist=0.00152956142346:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout:annotation_references=_Reference_title_'Snakes _Serpentes_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=31-OCT-2009:source_mol_type=genomic DNA:annotation_organism=Cyclura nubila:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=FJ433956.1_f0:db_xref=GI_238822366:GC_content=49.0284005979:protein_id=ACR58834.1:product=BDNF:annotation_data_file_division=VRT:translation=SCMKAAPMKEVSLRGQGSLAYPGLRTQGNLENLGGPNDATRGLTSLADTFEHVIEELLDEQQAVQPSKENKDADLYSSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSTSEWVTAAEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNSKGYTKEGCRGIDKRYWNSQCRTTQSYVRALTMDNKKRVGWRFIRIDTSC:source_organism=Cyclura nubila:annotation_gi=238822365:source_db_xref=taxon_51214:name=FJ433956.1_f0:annotation_accessions=_'FJ433956'_:source_feature_id=FJ433956.1_source:annotation_source=Cyclura nubila:gene=BDNF:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1],(GQ853275.1_f0:0.00626452[&&NHX:dist=0.00626451851656:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout:annotation_references=_Reference_title_'Tracing the origins of iguanid lizards and boine snakes of the pacific'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=24-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Dipsosaurus dorsalis:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=GQ853275.1_f0:db_xref=GI_289190215:GC_content=48.8059701493:protein_id=ADC93312.1:product=brain-derived neurotrophic factor precursor:annotation_data_file_division=VRT:translation=SCMKAAPMKEVSLRGQGSLAYPGLRTQGNLENLGGPNDATRGLTSLADTFEHVIEELLDEQQAIQPSKENKDADLYSSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSTSEWVTAAEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNSKGYTKEGCRGIDKRYWNSQCRTTQSYVRALTMDNKKRVGWRFIRIDTSC:source_organism=Dipsosaurus dorsalis:annotation_gi=289190214:source_db_xref=taxon_51217:name=GQ853275.1_f0:annotation_accessions=_'GQ853275'_:source_feature_id=GQ853275.1_source:annotation_source=Dipsosaurus dorsalis:gene=BDNF:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:annotation_sequence_version=1],(AY987980.1_f0:1.117e-06[&&NHX:dist=1.11700252063e-06:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout:annotation_references=_Reference_title_'Vicariant origin of malagasy reptiles supports late cretaceous antarctic land bridge'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=11-AUG-2009:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.00149253731343:annotation_keywords=_''_:feature_id=AY987980.1_f0:db_xref=GI_66276403:GC_content=49.552238806:protein_id=AAY44187.1:product=brain-derived neurotrophic factor:annotation_data_file_division=VRT:translation=SCMKAAPMKEVSLRGQGSLAYPGLRTQGNLENLGGPNDATRGLTSLADTFEHVIEELLDEQQAVQPSKENKDADLYSSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSTSEWVTAAEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNSKGYTKEGCRGIDKRYWNSQCRTTQSYVRALTMDNKKRVGWRFIRIDTSC:source_organism=Brachylophus fasciatus:annotation_gi=66276402:source_db_xref=taxon_46195:name=AY987980.1_f0:annotation_accessions=_'AY987980'_:source_feature_id=AY987980.1_source:annotation_source=Brachylophus fasciatus _banded iguana_:gene=BDNF:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1],JF806018.1_f0:1.117e-06[&&NHX:dist=1.11700252063e-06:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeny of iguanian lizards inferred from 29 nuclear loci_ and a comparison of concatenated and species-tree approaches for an ancient_ rapid radiation'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=22-SEP-2011:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=JF806018.1_f0:db_xref=GI_336110114:GC_content=49.7014925373:protein_id=AEI16825.1:product=brain-derived neurotrophic factor:annotation_data_file_division=VRT:translation=SCMKAAPMKEVSLRGQGSLAYPGLRTQGNLENLGGPNDATRGLTSLADTFEHVIEELLDEQQAVQPSKENKDADLYSSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSTSEWVTAAEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNSKGYTKEGCRGIDKRYWNSQCRTTQSYVRALTMDNKKRVGWRFIRIDTSC:source_organism=Brachylophus fasciatus:annotation_gi=336110113:source_db_xref=taxon_46195:name=JF806018.1_f0:annotation_accessions=_'JF806018'_:source_feature_id=JF806018.1_source:annotation_source=Brachylophus fasciatus _banded iguana_:gene=BDNF:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1])99:0.00934989[&&NHX:support=99.0:dist=0.00934989236971:name=NoName:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout])74:0.0045447[&&NHX:support=74.0:dist=0.00454469879565:name=NoName:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout])32:1.117e-06[&&NHX:support=32.0:dist=1.11700252063e-06:name=NoName:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout],GQ853272.1_f0:0.00609167[&&NHX:dist=0.00609167462195:tree_method_id=323661413757398.84_BDNF@MafftLinsi@gappyout:annotation_references=_Reference_title_'Tracing the origins of iguanid lizards and boine snakes of the pacific'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=24-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Cyclura pinguis:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=GQ853272.1_f0:db_xref=GI_289190209:GC_content=49.552238806:protein_id=ADC93309.1:product=brain-derived neurotrophic factor precursor:annotation_data_file_division=VRT:translation=SCMKAAPMKEVSLRGQGSLAYPGLRTPGNLENLGGPNDATRGLTSLADTFEHVIEELLDEQQAVQPSKENKDADLYSSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSTSEWVTAAEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNSKGYTKEGCRGIDKRYWNSQCRTTQSYVRALTMDNKKRVGWRFIRIDTSC:source_organism=Cyclura pinguis:annotation_gi=289190208:source_db_xref=taxon_118683:name=GQ853272.1_f0:annotation_accessions=_'GQ853272'_:source_feature_id=GQ853272.1_source:annotation_source=Cyclura pinguis:gene=BDNF:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1]);






MT-ND2
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_MT-ND2@MafftLinsi@gappyout

newick format

(AF528721.1_f1:0.23621,(AF049857.1_f1:0.344835,((U82687.1_f1:0.0248847,GQ502764.1_f1:0.0383889)90:0.0554134,(GQ502763.1_f1:0.0974076,(AJ278511.2_f3:1.32801e-06,NC_002793.1_f3:1.32801e-06)100:0.110622)50:0.0130623)96:0.169185)1:0.23621);


nhx format

(AJ278511.2_f3:1.32801e-06[&&NHX:dist=1.32801070319e-06:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Radiation of extant marsupials after the K/T boundary_ evidence from complete mitochondrial genomes'_ ...__ Reference_title_'Marsupial relationships and a timeline for marsupial radiation in South Gondwana'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=15-APR-2013:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=On May 20_ 2001 this sequence version replaced gi_13751149.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AJ278511.2_f3:db_xref=GI_13751151:GC_content=44.6050096339:protein_id=CAC37084.1:annotation_keywords=_'12S ribosomal RNA'_ '12S rRNA gene'_ '16S ribosomal RNA'_ '16S rRNA gene'_ 'ATP synthase F0 subunit 6'_ 'ATP synthase F0 subunit 8'_ 'atp6 gene'_ 'atp8 gene'_ 'complete genome'_ 'coxI gene'_ 'coxII gene'_ 'coxIII gene'_ 'cytb gene'_ 'cytochrome b'_ 'cytochrome c oxidase subunit I'_ 'cytochrome c oxidase subunit II'_ 'cytochrome c oxidase subunit III'_ 'NADH dehydrogenase subunit 1'_ 'NADH dehydrogenase subunit 2'_ 'NADH dehydrogenase subunit 3'_ 'NADH dehydrogenase subunit 4'_ 'NADH dehydrogenase subunit 4L'_ 'NADH dehydrogenase subunit 5'_ 'NADH dehydrogenase subunit 6'_ 'NADH1 gene'_ 'NADH2 gene'_ 'NADH3 gene'_ 'NADH4 gene'_ 'NADH4L gene'_ 'NADH5 gene'_ 'NADH6 gene'_:product=NADH dehydrogenase subunit 2:annotation_data_file_division=VRT:translation=MSPTTTLMLTSSLATGTIITASSYHWMMAWIGLEMNTLAIIPIISKQHHPRATEAATKYFLTQAAASAMLLFSSTINAWQTGTWDITQMTDPTATVLLTMALATKLGLAPMHFWLPEVLQGTTMKTALIITTWQKLAPMALIYLTANNLSPQTLLTMAILSTLLGGWGGLNQTQTRKIMAYSSIAHLGWMAAITPMLTNILTLNLTTYLIMTTSMFYALILSKTKTIQDTTTIWTLSPTLTIMMMLTLLSLGGLPPLTGFMPKWLILEELTTQNLTTMAMMLALSALLSLFFYLRLTYTTTMTLSPNTTTTHHKWRFKPTPTTTLLTTTLPLTLMMLPMTPTILA:source_organism=Iguana iguana:annotation_gi=14161124:source_db_xref=taxon_8517:name=AJ278511.2_f3:annotation_accessions=_'AJ278511'_:source_feature_id=AJ278511.2_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=nadh2:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=2],(GQ502763.1_f1:0.0974076[&&NHX:dist=0.0974076231802:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout:annotation_references=_Reference_title_'Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=14-FEB-2013:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 162073:annotation_organism=Ctenosaura palearis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=GQ502763.1_f1:db_xref=GI_290790364:GC_content=43.7379576108:protein_id=ADD62720.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 2:annotation_data_file_division=VRT:translation=MSPTTTSMLLSSLATGTIITASSHHWLMAWIGLEMNTLAIIPIISKQHHPRATEAATKYFLTQAAASAMLLFSSTMNAWQTGTWDITQLTSPTATVLLTMALATKLGLAPVHFWLPEVLQGSSMKTALIITTWQKLAPMALIFLTANNLSTPILLTMAILSTLLGGWAGLNQTQTRKIMAYSSIAHLGWMAAITPMLTNILILNLIIYLIMTTSMFYTLIISQTKTIQDTTTIWTSSPTLTIMMMLTLLSLGGLPPLTGFMPKWLILEELTTQSLTTMATMLALSALLSLFFYLRLAYTTTMTLSPNTTTINHKWRFMPTSTTTPLTITLPLTLMMLPMTPMILS:source_organism=Ctenosaura palearis:annotation_gi=290790362:source_db_xref=taxon_51211:name=GQ502763.1_f1:annotation_accessions=_'GQ502763'_:source_feature_id=GQ502763.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura palearis:gene=ND2:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Guatemala_ Depto. Zacapa_ 22 km WSW _by road_ Rio Hondo:annotation_sequence_version=1],((U82687.1_f1:0.0248847[&&NHX:dist=0.0248847222478:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout:annotation_references=_Reference_title_'Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=03-OCT-1998:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 144194_ Museum of Vertebrate Zoology_ University of California at Berkeley:annotation_organism=Sauromalus ater:annotation_comment=On Sep 16_ 1998 this sequence version replaced gi_1753305.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U82687.1_f1:db_xref=GI_3603154:GC_content=45.472061657:protein_id=AAC62304.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 2:annotation_data_file_division=VRT:translation=MSPTTTSLLLSSLAMGTIITASSHHWMMAWIGLEMNTLAIIPIISKQHHPRATEAATKYFLTQAAASAMLLFSSTMNAWQTGTWDITQLTNPMATILLTMALATKLGLAPMHFWLPEVLQGSTMKTALIITTWQKLAPMALIYLTANNLSTPTLLTMAILSTLLGGWGGLNQTQTRKIMAYSSIAHLGWMAAITPMLTNILTLNLIIYLIMTTAMFYMLILSKTKTIQDTTTIWTSSPTLTIMMMLTLLSLGGLPPLTGFMPKWLILEELVMQNLTTMATMLALSALLSLFFYLRLTYTTTMTLAPTTTTTHHKWRFKPTSTTTLLTTTLPLTLMMLPMTPMTLL:source_organism=Sauromalus ater:annotation_gi=3603152:source_db_xref=taxon_65995:name=U82687.1_f1:annotation_accessions=_'U82687'_ 'U71344'_:source_feature_id=U82687.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=ND2:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Pitiquito_ 6 mi. SE _by Mex Hwy 2_ of Carborca_ Sonora:annotation_sequence_version=1],GQ502764.1_f1:0.0383889[&&NHX:dist=0.0383888713038:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout:annotation_references=_Reference_title_'Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=14-FEB-2013:source_mol_type=genomic DNA:source_specimen_voucher=MVZ 161263:annotation_organism=Sauromalus australis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=GQ502764.1_f1:db_xref=GI_290790368:GC_content=45.2793834297:protein_id=ADD62723.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 2:annotation_data_file_division=VRT:translation=MSPTATSLLLSSLAMGTIITASSHHWMMAWIGLEMNTLAIIPIISKQHHPRATEAATKYFLTQAAASAMLLFSSTMNAWQTGTWDITQLTNPTASILLTMALATKLGLAPVHFWLPEVLQGSTMKTALIITTWQKLAPMTLIYLTANNLSTPTLLTMAILSTLLGGWGGLNQTQTRKIMAYSSIAHLGWMAAITPMLTNILTLNLIIYLIMTTAMFYMLILSKTKTIQDTTMIWTSSPTLTIMMMLTLLSLGGLPPLTGFMPKWLILEELVTQNLTTMATTLALSALLSLFFYLRLTYTTTMTLAPSTTTTHHKWRFKPTSTTALLTTTLPLTLMMLPMTPMMLL:source_organism=Sauromalus australis:annotation_gi=290790366:source_db_xref=taxon_65996:name=GQ502764.1_f1:annotation_accessions=_'GQ502764'_:source_feature_id=GQ502764.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus australis:gene=ND2:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Baja California_ 2.1 mi W _by road_ El Arco:annotation_sequence_version=1])90:0.0554134[&&NHX:support=90.0:dist=0.0554133955808:name=NoName:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout],(AF049857.1_f1:0.344835[&&NHX:dist=0.344835369645:source_note=Locality of specimen_ Beach Flats_ Bahia de Los Angeles_ Baja California Norte_ Mexico:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout:annotation_references=_Reference_title_'Molecular tests of phylogenetic taxonomies_ a general procedure and example using four subfamilies of the lizard family Iguanidae'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-MAR-2001:source_mol_type=genomic DNA:source_specimen_voucher=Museum of Vertebrate Zoology_ Berkeley_ California MVZ161172:annotation_organism=Dipsosaurus dorsalis:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF049857.1_f1:db_xref=GI_4105728:GC_content=39.3063583815:protein_id=AAD02513.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 2:annotation_data_file_division=VRT:translation=MNPMVTTMILSSLATGTIITASSFHWLMAWIGLEMNTLAIIPMISKQHHPRATEAATKYFLTQAAASAMILFSSTMNAWHTGTWDITQLSNPMSTILLTIALAMKLGLAPTHFWLPEVLQGSTLKTALIITTWQKLAPMALIIMTANNLPPTILLTIAMLSSLVGGWGGLNQTQTRKIMAYSSIAHLGWMAAITPFMTNILILNLIIYLAMTTSMFYSLILFKSKTIQDTTTSWTTSPTLTIMMMLTLLSLGGLPPLTGFLPKWLILDELTMQNLIPMATTMALSALLSLFFYLRLSYTTTLTLSPNTTTTSHKWRFKPSTPSLILTTTIPITLLTLPISSLVLT:source_organism=Dipsosaurus dorsalis:annotation_gi=4105726:source_db_xref=taxon_51217:name=AF049857.1_f1:annotation_accessions=_'AF049857'_:source_feature_id=AF049857.1_source:transl_table=2:annotation_source=mitochondrion Dipsosaurus dorsalis:gene=ND2:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:annotation_sequence_version=1],AF528721.1_f1:0.47242[&&NHX:dist=0.472419832037:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships within Iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=10-SEP-2003:source_mol_type=genomic DNA:source_specimen_voucher=STLID' 920451_ SDID' 189337:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF528721.1_f1:db_xref=GI_33327587:GC_content=44.7013487476:protein_id=AAQ09124.1:annotation_keywords=_''_:product=NADH dehydrogenase subunit 2:annotation_data_file_division=VRT:translation=MSPPMTTLILSSLATGTIITATSYHWMMAWMGLEMNTLAILPLISKQHHPRATEAATKYFLTQAAASAMILFSSTINAWQTGSWDITQLSNQTSTTLLMVALAMKLGLAPLHFWLPEVLQGSTMKTALIITTWQKLAPMALMYLTANNLPHNTLPILAMLSTTIGGWAGLNQTQTRKIMAYSSITHLGWMAAITPMLTNLLVLNLLIYLIMTTSMFLMLNLSKAKTIQDTTTTWTTSPALTIMTMMTLLSLGGLPPLTGFMPKWLILEELAMQSLIPTATVLALSALLSLFFYLRLTYTTALTLSPNTTTTTHKWRFKSPTNTHVLSASLPLTLMMLPMTTLMLL:source_organism=Brachylophus fasciatus:annotation_gi=33327585:source_db_xref=taxon_46195:name=AF528721.1_f1:annotation_accessions=_'AF528721'_:source_feature_id=AF528721.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=ND2:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:source_country=Fiji:annotation_sequence_version=1])96:0.169185[&&NHX:support=96.0:dist=0.16918459287:name=NoName:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout])50:0.0130623[&&NHX:support=50.0:dist=0.013062285543:name=NoName:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout])100:0.110622[&&NHX:support=100.0:dist=0.110622478794:name=NoName:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout],NC_002793.1_f3:1.32801e-06[&&NHX:dist=1.32801070319e-06:tree_method_id=323661413757398.84_MT-ND2@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=01-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=REVIEWED REFSEQ_ This record has been curated by NCBI staff. The_reference sequence was derived from AJ278511._COMPLETENESS_ full length.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=NC_002793.1_f3:db_xref=GI_14193047:GC_content=44.6050096339:protein_id=NP_115837.1:annotation_keywords=_'RefSeq'_:product=NADH dehydrogenase subunit 2:annotation_data_file_division=VRT:translation=MSPTTTLMLTSSLATGTIITASSYHWMMAWIGLEMNTLAIIPIISKQHHPRATEAATKYFLTQAAASAMLLFSSTINAWQTGTWDITQMTDPTATVLLTMALATKLGLAPMHFWLPEVLQGTTMKTALIITTWQKLAPMALIYLTANNLSPQTLLTMAILSTLLGGWGGLNQTQTRKIMAYSSIAHLGWMAAITPMLTNILTLNLTTYLIMTTSMFYALILSKTKTIQDTTTIWTLSPTLTIMMMLTLLSLGGLPPLTGFMPKWLILEELTTQNLTTMAMMLALSALLSLFFYLRLTYTTTMTLSPNTTTTHHKWRFKPTPTTTLLTTTLPLTLMMLPMTPTILA:source_organism=Iguana iguana:annotation_gi=14193045:source_db_xref=taxon_8517:name=NC_002793.1_f3:annotation_accessions=_'NC_002793'_:source_feature_id=NC_002793.1_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=ND2:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1]);






MT-CO3
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_MT-CO3@MafftLinsi@gappyout

newick format

(((AJ278511.2_f8:3.12995e-06,NC_002793.1_f8:3.12995e-06)100:0.0742239,(HQ141194.1_f0:3.12995e-06,((HQ141195.1_f0:3.12995e-06,HQ141196.1_f0:3.12995e-06)100:0.00156829,(HQ141193.1_f0:0.00320641,HQ141197.1_f0:0.00319128)0:3.12995e-06)100:0.00635493)100:0.119289)100:0.0437843,((HQ141186.1_f0:0.00258386,((HQ141211.1_f0:0.00329715,(HQ141222.1_f0:3.12995e-06,HQ141221.1_f0:3.12995e-06)100:0.00326377)100:0.00328883,(HQ141215.1_f0:0.00325105,(HQ141218.1_f0:0.00162156,((HQ141213.1_f0:3.12995e-06,HQ141212.1_f0:3.12995e-06)77:0.00163194,(HQ141216.1_f0:0.00158464,(HQ141214.1_f0:3.12995e-06,HQ141217.1_f0:3.12995e-06)100:0.00324415)0:3.12995e-06)77:0.00491011)26:3.12995e-06)26:3.12995e-06)77:0.00728135)100:0.10651,(((HQ141202.1_f0:3.12995e-06,(HQ141198.1_f0:3.12995e-06,((HQ141201.1_f0:3.12995e-06,HQ141203.1_f0:3.12995e-06)0:3.12995e-06,(HQ141199.1_f0:3.12995e-06,HQ141200.1_f0:3.12995e-06)0:3.12995e-06)0:3.12995e-06)26:3.12995e-06)81:0.00312017,((HQ141183.1_f0:0.00156265,HQ141220.1_f0:0.00159232)0:2.52515e-05,((HQ141189.1_f0:3.12995e-06,HQ141185.1_f0:0.0048306)71:0.00160275,((HQ141191.1_f0:3.12995e-06,HQ141190.1_f0:3.12995e-06)0:3.12995e-06,(HQ141188.1_f0:3.12995e-06,(HQ141187.1_f0:3.12995e-06,HQ141184.1_f0:3.12995e-06)71:3.12995e-06)0:3.12995e-06)71:3.12995e-06)26:3.12995e-06)100:0.00329972)81:0.00179691,((HQ141192.1_f0:3.12995e-06,(HQ141226.1_f0:3.12995e-06,HQ141227.1_f0:3.12995e-06)100:0.00170185)100:0.00321709,((HQ141207.1_f0:3.12995e-06,HQ141210.1_f0:3.12995e-06)100:0.00158854,(((HQ141209.1_f0:3.12995e-06,HQ141206.1_f0:3.12995e-06)76:3.12995e-06,(HQ141208.1_f0:3.12995e-06,HQ141205.1_f0:3.12995e-06)11:3.12995e-06)87:3.12995e-06,(HQ141204.1_f0:3.12995e-06,(HQ141219.1_f0:0.00322723,((HQ141228.1_f0:3.12995e-06,HQ141229.1_f0:3.12995e-06)100:3.12995e-06,(HQ141225.1_f0:3.12995e-06,(HQ141224.1_f0:3.12995e-06,HQ141223.1_f0:3.12995e-06)21:3.12995e-06)23:3.12995e-06)100:0.00321506)98:0.00484335)98:3.12995e-06)18:3.12995e-06)100:0.0352626)5:0.00304031)99:0.0485574)100:0.0437843);


nhx format

(((HQ141195.1_f0:3.12995e-06[&&NHX:dist=3.12994638037e-06:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-22a:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:source_isolate=S2:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141195.1_f0:db_xref=GI_325310946:GC_content=48.992248062:protein_id=ADZ11117.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=IAALLMTSGLAAWFHFNNTILLYLGLTILLLTMYQWWRDIIREGTFQGHHTMPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGTRKEAMQALFLTIILGLYFTALQAMEYYEAPFTISDSIYGTTFFVATGFHGLHVIIGSSFLIICLIRQILFHFTTNHHFGF:source_organism=Sauromalus ater:annotation_gi=325310945:source_db_xref=taxon_65995:name=HQ141195.1_f0:annotation_accessions=_'HQ141195'_:source_feature_id=HQ141195.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 50 km. SW of Caborca:annotation_sequence_version=1],HQ141196.1_f0:3.12995e-06[&&NHX:dist=3.12994638037e-06:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-22b:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:source_isolate=S3:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141196.1_f0:db_xref=GI_325310948:GC_content=48.992248062:protein_id=ADZ11118.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=IAALLMTSGLAAWFHFNNTILLYLGLTILLLTMYQWWRDIIREGTFQGHHTMPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGTRKEAMQALFLTIILGLYFTALQAMEYYEAPFTISDSIYGTTFFVATGFHGLHVIIGSSFLIICLIRQILFHFTTNHHFGF:source_organism=Sauromalus ater:annotation_gi=325310947:source_db_xref=taxon_65995:name=HQ141196.1_f0:annotation_accessions=_'HQ141196'_:source_feature_id=HQ141196.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 50 km. SW of Caborca:annotation_sequence_version=1])100:0.00156829[&&NHX:support=100.0:dist=0.00156829230301:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],(HQ141193.1_f0:0.00320641[&&NHX:dist=0.00320641437138:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-19:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:source_isolate=S4:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141193.1_f0:db_xref=GI_325310942:GC_content=48.992248062:protein_id=ADZ11115.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=IAALLMTSGLAAWFHFNNTILLYLGLTILLLTMYQWWRDIIREGTFQGHHTMPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGARKEAMQALFLTIILGLYFTALQAMEYYEAPFTISDSIYGTTFFVATGFHGLHVIIGSSFLIICLIRQILFHFTTNHHFGF:source_organism=Sauromalus ater:annotation_gi=325310941:source_db_xref=taxon_65995:name=HQ141193.1_f0:annotation_accessions=_'HQ141193'_:source_feature_id=HQ141193.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 80 km. S of San Bartolo:annotation_sequence_version=1],HQ141197.1_f0:0.00319128[&&NHX:dist=0.00319128247503:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-21:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:source_isolate=S5:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141197.1_f0:db_xref=GI_325310950:GC_content=48.992248062:protein_id=ADZ11119.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=IAALLMTSGLAAWFHFNNTILLYLGLTILLLTMYQWWRDIIREGTFQGHHTMPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGTRKEAMQALFLTIILGLYFTALQAMEYYEAPFTISDSIYGTTFFVATGFHGLHVIIGSSFLIICLIRQILFHFTTNHHFGF:source_organism=Sauromalus ater:annotation_gi=325310949:source_db_xref=taxon_65995:name=HQ141197.1_f0:annotation_accessions=_'HQ141197'_:source_feature_id=HQ141197.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 8 km SW of Caborca:annotation_sequence_version=1])0:3.12995e-06[&&NHX:support=0.0:dist=3.12994638037e-06:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])100:0.00635493[&&NHX:support=100.0:dist=0.00635493135246:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],(((HQ141186.1_f0:0.00258386[&&NHX:dist=0.00258386345766:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38040:annotation_organism=Ctenosaura 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'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Sinaloa:annotation_sequence_version=1],((HQ141211.1_f0:0.00329715[&&NHX:dist=0.00329714798327:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38041:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.00467289719626:source_isolate=Cp04:support=1.0:codon_start=2:nuc_degen_prop=0.0015503875969:source_organelle=mitochondrion:feature_id=HQ141211.1_f0:db_xref=GI_325310978:GC_content=43.2558139535:protein_id=ADZ11133.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=ITALLMTSGLAIWFHFNNTXLLYLGLIILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFIMSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIHPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKEATQALLLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLTICLIRQIMFHFTTNHHFGF:source_organism=Ctenosaura pectinata:annotation_gi=325310977:source_db_xref=taxon_496808:name=HQ141211.1_f0:annotation_accessions=_'HQ141211'_:source_feature_id=HQ141211.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura pectinata:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Sinaloa_ 124 km NW Mazatlan:annotation_sequence_version=1],(HQ141222.1_f0:3.12995e-06[&&NHX:dist=3.12994638037e-06:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38002:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:source_isolate=Cp02:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141222.1_f0:db_xref=GI_325311000:GC_content=43.8759689922:protein_id=ADZ11144.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=IAALLMTSGLAIWFHFNNTTLLYLGLIILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFIMSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIHPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKEATQALLLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLTICLIRQIMFHFTTNHHFGF:source_organism=Ctenosaura pectinata:annotation_gi=325310999:source_db_xref=taxon_496808:name=HQ141222.1_f0:annotation_accessions=_'HQ141222'_:source_feature_id=HQ141222.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura pectinata:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Sonora_ Navolato:annotation_sequence_version=1],HQ141221.1_f0:3.12995e-06[&&NHX:dist=3.12994638037e-06:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38001:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:source_isolate=Cp01:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141221.1_f0:db_xref=GI_325310998:GC_content=43.8759689922:protein_id=ADZ11143.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=IAALLMTSGLAIWFHFNNTTLLYLGLIILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFIMSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIHPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKEATQALLLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLTICLIRQIMFHFTTNHHFGF:source_organism=Ctenosaura pectinata:annotation_gi=325310997:source_db_xref=taxon_496808:name=HQ141221.1_f0:annotation_accessions=_'HQ141221'_:source_feature_id=HQ141221.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura pectinata:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Sonora_ Culiacan:annotation_sequence_version=1])100:0.00326377[&&NHX:support=100.0:dist=0.00326376976504:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])100:0.00328883[&&NHX:support=100.0:dist=0.00328883374191:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],(HQ141215.1_f0:0.00325105[&&NHX:dist=0.00325104822718:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38045:annotation_organism=Ctenosaura 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hemilopha nolascensis:annotation_data_file_division=VRT:translation=IXALLMTSGLAIWFHFNNTALLYLGLTILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFITSEIFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQIMFHFTTTHHFGF:annotation_keywords=_''_:annotation_gi=325311013:source_db_xref=taxon_993012:name=HQ141229.1_f0:annotation_accessions=_'HQ141229'_:source_feature_id=HQ141229.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura hemilopha nolascensis:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Isla San Pedro Nolasco:annotation_sequence_version=1])100:3.12995e-06[&&NHX:support=100.0:dist=3.12994638037e-06:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],(HQ141225.1_f0:3.12995e-06[&&NHX:dist=3.12994638037e-06:source_sub_species=nolascensis:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38031:annotation_organism=Ctenosaura hemilopha nolascensis:prot_degen_prop=0.0:source_isolate=Ch32:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141225.1_f0:db_xref=GI_325311006:GC_content=44.1860465116:protein_id=ADZ11147.1:product=cytochrome c oxidase subunit III:source_organism=Ctenosaura hemilopha nolascensis:annotation_data_file_division=VRT:translation=ITALLMTSGLAIWFHFNNTALLYLGLTILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFITSEIFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQIMFHFTTTHHFGF:annotation_keywords=_''_:annotation_gi=325311005:source_db_xref=taxon_993012:name=HQ141225.1_f0:annotation_accessions=_'HQ141225'_:source_feature_id=HQ141225.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura hemilopha nolascensis:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Isla San Pedro 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nolascensis:annotation_data_file_division=VRT:translation=ITALLMTSGLAIWFHFNNTALLYLGLTILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFITSEIFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQIMFHFTTTHHFGF:annotation_keywords=_''_:annotation_gi=325311003:source_db_xref=taxon_993012:name=HQ141224.1_f0:annotation_accessions=_'HQ141224'_:source_feature_id=HQ141224.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura hemilopha nolascensis:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Isla San Pedro 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nolascensis:annotation_data_file_division=VRT:translation=IXALLMTSGLAIWFHFNNTALLYLGLTILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFITSEIFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQIMFHFTTTHHFGF:annotation_keywords=_''_:annotation_gi=325311001:source_db_xref=taxon_993012:name=HQ141223.1_f0:annotation_accessions=_'HQ141223'_:source_feature_id=HQ141223.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura hemilopha nolascensis:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Isla San Pedro Nolasco:annotation_sequence_version=1])21:3.12995e-06[&&NHX:support=21.0:dist=3.12994638037e-06:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])23:3.12995e-06[&&NHX:support=23.0:dist=3.12994638037e-06:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])100:0.00321506[&&NHX:support=100.0:dist=0.00321505863352:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],HQ141219.1_f0:0.00322723[&&NHX:dist=0.00322723496909:source_sub_species=macrolopha:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38004:annotation_organism=Ctenosaura hemilopha macrolopha:prot_degen_prop=0.0:source_isolate=Ch19:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141219.1_f0:db_xref=GI_325310994:GC_content=43.8759689922:protein_id=ADZ11141.1:product=cytochrome c oxidase subunit III:source_organism=Ctenosaura hemilopha macrolopha:annotation_data_file_division=VRT:translation=ITALLMTSGLAIWFHFNNTALLYLGLTILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFITSEIFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQIMFHFTTTHHFGF:annotation_keywords=_''_:annotation_gi=325310993:source_db_xref=taxon_993011:name=HQ141219.1_f0:annotation_accessions=_'HQ141219'_:source_feature_id=HQ141219.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura hemilopha macrolopha:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Sonora_ Los Mochis:annotation_sequence_version=1])98:0.00484335[&&NHX:support=98.0:dist=0.00484334664792:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],HQ141204.1_f0:3.12995e-06[&&NHX:dist=3.12994638037e-06:source_sub_species=conspicuosa:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KPEC102:annotation_organism=Ctenosaura hemilopha conspicuosa:prot_degen_prop=0.00467289719626:source_isolate=Ch13:support=1.0:codon_start=2:nuc_degen_prop=0.0015503875969:source_organelle=mitochondrion:feature_id=HQ141204.1_f0:db_xref=GI_325310964:GC_content=44.1860465116:protein_id=ADZ11126.1:product=cytochrome c oxidase subunit III:source_organism=Ctenosaura hemilopha conspicuosa:annotation_data_file_division=VRT:translation=IXALLMTSGLAIWFHFNNTALLYLGLTILLLTMYQWWRDIVREGTFQGHHTTLVQKGLRYGMILFITSEIFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGKRKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQIMFHFTTTHHFGF:annotation_keywords=_''_:annotation_gi=325310963:source_db_xref=taxon_993009:name=HQ141204.1_f0:annotation_accessions=_'HQ141204'_:source_feature_id=HQ141204.1_source:transl_table=2:annotation_source=mitochondrion Ctenosaura hemilopha conspicuosa:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Mexico_ Isla San Esteban:annotation_sequence_version=1])98:3.12995e-06[&&NHX:support=98.0:dist=3.12994638037e-06:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])18:3.12995e-06[&&NHX:support=18.0:dist=3.12994638037e-06:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])100:0.0352626[&&NHX:support=100.0:dist=0.0352626104139:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])5:0.00304031[&&NHX:support=5.0:dist=0.00304031451354:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])99:0.0485574[&&NHX:support=99.0:dist=0.0485574018565:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])100:0.0875687[&&NHX:support=100.0:dist=0.087568683939:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],(AJ278511.2_f8:3.12995e-06[&&NHX:dist=3.12994638037e-06:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Radiation of extant marsupials after the K/T boundary_ evidence from complete mitochondrial genomes'_ ...__ Reference_title_'Marsupial relationships and a timeline for marsupial radiation in South Gondwana'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=15-APR-2013:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=On May 20_ 2001 this sequence version replaced gi_13751149.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AJ278511.2_f8:db_xref=GI_13751156:GC_content=47.9643765903:protein_id=CAC37089.1:annotation_keywords=_'12S ribosomal RNA'_ '12S rRNA gene'_ '16S ribosomal RNA'_ '16S rRNA gene'_ 'ATP synthase F0 subunit 6'_ 'ATP synthase F0 subunit 8'_ 'atp6 gene'_ 'atp8 gene'_ 'complete genome'_ 'coxI gene'_ 'coxII gene'_ 'coxIII gene'_ 'cytb gene'_ 'cytochrome b'_ 'cytochrome c oxidase subunit I'_ 'cytochrome c oxidase subunit II'_ 'cytochrome c oxidase subunit III'_ 'NADH dehydrogenase subunit 1'_ 'NADH dehydrogenase subunit 2'_ 'NADH dehydrogenase subunit 3'_ 'NADH dehydrogenase subunit 4'_ 'NADH dehydrogenase subunit 4L'_ 'NADH dehydrogenase subunit 5'_ 'NADH dehydrogenase subunit 6'_ 'NADH1 gene'_ 'NADH2 gene'_ 'NADH3 gene'_ 'NADH4 gene'_ 'NADH4L gene'_ 'NADH5 gene'_ 'NADH6 gene'_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=MTHQAHAYHMVDPSPWPLTGAIAALLMTSGLAVWFHFNNTTLLYLGLVILLLTMYQWWRDIVREGTFQGHHTALVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIHPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGARKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQMLFHFTTSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS:source_organism=Iguana iguana:annotation_gi=14161124:source_db_xref=taxon_8517:name=AJ278511.2_f8:annotation_accessions=_'AJ278511'_:source_feature_id=AJ278511.2_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=cox III:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=2],NC_002793.1_f8:3.12995e-06[&&NHX:dist=3.12994638037e-06:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=01-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=REVIEWED REFSEQ_ This record has been curated by NCBI staff. The_reference sequence was derived from AJ278511._COMPLETENESS_ full length.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=NC_002793.1_f8:db_xref=GI_14193052:GC_content=47.9643765903:protein_id=NP_115842.1:annotation_keywords=_'RefSeq'_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=MTHQAHAYHMVDPSPWPLTGAIAALLMTSGLAVWFHFNNTTLLYLGLVILLLTMYQWWRDIVREGTFQGHHTALVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIHPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGARKETTQALFLTIILGLYFTALQAMEYYEAPFTISDSVYGTTFFVATGFHGLHVIIGSSFLIICLIRQMLFHFTTSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS:source_organism=Iguana iguana:annotation_gi=14193045:source_db_xref=taxon_8517:name=NC_002793.1_f8:annotation_accessions=_'NC_002793'_:source_feature_id=NC_002793.1_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=COX3:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1])100:0.0742239[&&NHX:support=100.0:dist=0.0742238571932:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout])100:0.119289[&&NHX:support=100.0:dist=0.119289117103:name=NoName:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout],HQ141194.1_f0:3.12995e-06[&&NHX:dist=3.12994638037e-06:tree_method_id=323661413757398.84_MT-CO3@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-20:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:source_isolate=S1:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141194.1_f0:db_xref=GI_325310944:GC_content=48.5271317829:protein_id=ADZ11116.1:annotation_keywords=_''_:product=cytochrome c oxidase subunit III:annotation_data_file_division=VRT:translation=IAALLMTSGLAAWFHFNNTILLYLGLTILLLTMYQWWRDIIREGTFQGHHTMPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPNGIRPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGTRKEAMQALFLTIILGLYFTALQAMEYYEAPFTISDSIYGTTFFVATGFHGLHVIIGSSFLIICLIRQILFHFTTNHHFGF:source_organism=Sauromalus ater:annotation_gi=325310943:source_db_xref=taxon_65995:name=HQ141194.1_f0:annotation_accessions=_'HQ141194'_:source_feature_id=HQ141194.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=COIII:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 40 km. S of Sonoyta:annotation_sequence_version=1]);






28s
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_28s@MafftLinsi@gappyout

newick format

(EU105177.1_f0:0.609584,(DQ283590.1_f0:1.01659,(EU407540.1_f1:8.17311e-07,(EU407536.1_f1:8.17311e-07,((EU407544.1_f1:8.17311e-07,(EU407538.1_f1:8.17311e-07,((EU407545.1_f1:8.17311e-07,EU407526.1_f1:8.17311e-07)0:8.17311e-07,(EU407543.1_f1:8.17311e-07,(EU407535.1_f1:8.17311e-07,(EU407531.1_f1:8.17311e-07,EU407534.1_f1:8.17311e-07)0:8.17311e-07)0:8.17311e-07)0:8.17311e-07)0:8.17311e-07)0:8.17311e-07)0:8.17311e-07,(((EU407539.1_f1:8.17311e-07,EU407542.1_f1:8.17311e-07)0:8.17311e-07,(EU407546.1_f1:8.17311e-07,EU407528.1_f1:8.17311e-07)0:8.17311e-07)0:8.17311e-07,(EU407537.1_f1:8.17311e-07,((EU407530.1_f1:8.17311e-07,(EU407532.1_f1:8.17311e-07,EU407529.1_f1:8.17311e-07)0:8.17311e-07)0:8.17311e-07,(EU407541.1_f1:8.17311e-07,(EU407527.1_f1:8.17311e-07,EU407533.1_f1:8.17311e-07)4:8.17311e-07)30:8.17311e-07)0:8.17311e-07)0:8.17311e-07)0:8.17311e-07)30:8.17311e-07)72:0.00813665)72:0.63168)1:0.609584);


nhx format

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Frost:annotation_organism=Iguana iguana:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=DQ283590.1_f0:GC_content=56.0801144492:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Iguana iguana:annotation_gi=90183589:source_db_xref=taxon_8517:name=DQ283590.1_f0:annotation_accessions=_'DQ283590'_:source_feature_id=DQ283590.1_source:annotation_source=Iguana iguana _common iguana_:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1],(EU407540.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura oedirhina:source_isolate=Ag 41:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407540.1_f1:GC_content=55.905511811:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura oedirhina:annotation_gi=171474186:source_db_xref=taxon_515443:name=EU407540.1_f1:annotation_accessions=_'EU407540'_:source_feature_id=EU407540.1_source:annotation_source=Ctenosaura oedirhina:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura oedirhina:source_isolate=AG 45:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407541.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura oedirhina:annotation_gi=171474187:source_db_xref=taxon_515443:name=EU407541.1_f1:annotation_accessions=_'EU407541'_:source_feature_id=EU407541.1_source:annotation_source=Ctenosaura oedirhina:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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_Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura oedirhina:source_isolate=AG 82:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407542.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura oedirhina:annotation_gi=171474188:source_db_xref=taxon_515443:name=EU407542.1_f1:annotation_accessions=_'EU407542'_:source_feature_id=EU407542.1_source:annotation_source=Ctenosaura oedirhina:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],(EU407546.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura bakeri:source_isolate=AG 134:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407546.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura bakeri:annotation_gi=171474192:source_db_xref=taxon_500334:name=EU407546.1_f1:annotation_accessions=_'EU407546'_:source_feature_id=EU407546.1_source:annotation_source=Ctenosaura bakeri:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1],EU407528.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura similis x bakeri:source_isolate=AG 01c:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407528.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura similis x bakeri:annotation_gi=171474174:source_db_xref=taxon_515442:name=EU407528.1_f1:annotation_accessions=_'EU407528'_:source_feature_id=EU407528.1_source:annotation_source=Ctenosaura similis x bakeri:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],(EU407544.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura bakeri:source_isolate=AG 18:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407544.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura bakeri:annotation_gi=171474190:source_db_xref=taxon_500334:name=EU407544.1_f1:annotation_accessions=_'EU407544'_:source_feature_id=EU407544.1_source:annotation_source=Ctenosaura bakeri:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1],(((EU407545.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura bakeri:source_isolate=AG 132:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407545.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura bakeri:annotation_gi=171474191:source_db_xref=taxon_500334:name=EU407545.1_f1:annotation_accessions=_'EU407545'_:source_feature_id=EU407545.1_source:annotation_source=Ctenosaura bakeri:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1],EU407526.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura similis x bakeri:source_isolate=AG 01a:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407526.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura similis x bakeri:annotation_gi=171474172:source_db_xref=taxon_515442:name=EU407526.1_f1:annotation_accessions=_'EU407526'_:source_feature_id=EU407526.1_source:annotation_source=Ctenosaura similis x bakeri:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],(((EU407531.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura similis:source_isolate=AG 25b:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407531.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura similis:annotation_gi=171474177:source_db_xref=taxon_51212:name=EU407531.1_f1:annotation_accessions=_'EU407531'_:source_feature_id=EU407531.1_source:annotation_source=Ctenosaura similis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1],EU407534.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura similis:source_isolate=Ag 26b:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407534.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura similis:annotation_gi=171474180:source_db_xref=taxon_51212:name=EU407534.1_f1:annotation_accessions=_'EU407534'_:source_feature_id=EU407534.1_source:annotation_source=Ctenosaura similis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],EU407535.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura similis:source_isolate=AG 26c:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407535.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura similis:annotation_gi=171474181:source_db_xref=taxon_51212:name=EU407535.1_f1:annotation_accessions=_'EU407535'_:source_feature_id=EU407535.1_source:annotation_source=Ctenosaura similis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],EU407543.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura oedirhina:source_isolate=AG 131:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407543.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura oedirhina:annotation_gi=171474189:source_db_xref=taxon_515443:name=EU407543.1_f1:annotation_accessions=_'EU407543'_:source_feature_id=EU407543.1_source:annotation_source=Ctenosaura oedirhina:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],EU407538.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura similis:source_isolate=AG 30b:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407538.1_f1:GC_content=55.1181102362:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura similis:annotation_gi=171474184:source_db_xref=taxon_51212:name=EU407538.1_f1:annotation_accessions=_'EU407538'_:source_feature_id=EU407538.1_source:annotation_source=Ctenosaura similis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout])0:8.17311e-07[&&NHX:support=0.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout])30:8.17311e-07[&&NHX:support=30.0:dist=8.17310801399e-07:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],EU407536.1_f1:8.17311e-07[&&NHX:dist=8.17310801399e-07:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogeography and hybridization in Ctenosaura species _Sauria_ Iguanidae_ from Caribbean Honduras_ insights from mitochondrial and nuclear DNA'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2008:source_mol_type=genomic DNA:annotation_organism=Ctenosaura similis:source_isolate=AG 27:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU407536.1_f1:GC_content=54.7619047619:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Ctenosaura similis:annotation_gi=171474182:source_db_xref=taxon_51212:name=EU407536.1_f1:annotation_accessions=_'EU407536'_:source_feature_id=EU407536.1_source:annotation_source=Ctenosaura similis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Ctenosaura'_:source_country=Honduras:annotation_sequence_version=1])72:0.00813665[&&NHX:support=72.0:dist=0.00813664857448:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout])72:0.63168[&&NHX:support=72.0:dist=0.631679857136:name=NoName:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout],EU105177.1_f0:1.21917[&&NHX:dist=1.21916845206:tree_method_id=323661413757398.84_28s@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships within the Xantusiidae _Squamata__ using trees to address evolutionary questions at multiple levels'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=05-AUG-2010:source_mol_type=genomic DNA:source_specimen_voucher=JAG 5/21/01:annotation_organism=Dipsosaurus dorsalis:source_isolate=I2:support=1.0:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=EU105177.1_f0:GC_content=62.6617375231:product=28S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Dipsosaurus dorsalis:annotation_gi=159078886:source_db_xref=taxon_51217:name=EU105177.1_f0:annotation_accessions=_'EU105177'_:source_feature_id=EU105177.1_source:annotation_source=Dipsosaurus dorsalis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Dipsosaurus'_:source_country=USA_ CA_ San Bernadino:annotation_sequence_version=1]);






rrnS
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_rrnS@MafftLinsi@gappyout

newick format

((AB028742.1_f0:0.0278949,(AJ278511.2_f0:1.3732e-06,NC_002793.1_f0:1.3732e-06)55:3.20661e-05)90:0.0895288,(AY948118.1_f1:0.0608656,((EU793996.1_f0:1.3732e-06,EU793995.1_f0:1.3732e-06)100:1.3732e-06,(AY948119.1_f1:1.3732e-06,(AY948122.1_f1:1.3732e-06,(AY948120.1_f1:1.3732e-06,AY948121.1_f1:1.3732e-06)3:1.3732e-06)0:1.3732e-06)100:0.0589764)53:1.3732e-06)90:0.0895288);


nhx format

((AY948118.1_f1:0.0608656[&&NHX:dist=0.0608655813399:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Development of primers to characterize the mitochondrial control region of Gal pagos land and marine iguanas _Conolophus and Amblyrhynchus_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=11-AUG-2005:source_mol_type=genomic DNA:annotation_organism=Amblyrhynchus cristatus:source_isolate=Santa Cruz 8:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AY948118.1_f1:GC_content=31.0344827586:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Amblyrhynchus cristatus:annotation_gi=61652746:source_db_xref=taxon_51208:name=AY948118.1_f1:annotation_accessions=_'AY948118'_:source_feature_id=AY948118.1_source:annotation_source=mitochondrion Amblyrhynchus cristatus:source_tissue_type=blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Amblyrhynchus'_:annotation_sequence_version=1],((EU793996.1_f0:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Direct Submission'_ ...__:annotation_date=13-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Cyclura pinguis:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=EU793996.1_f0:source_haplotype=2:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Cyclura pinguis:annotation_gi=193875644:source_db_xref=taxon_118683:name=EU793996.1_f0:annotation_accessions=_'EU793996'_:source_feature_id=EU793996.1_source:GC_content=45.261669024:annotation_source=mitochondrion Cyclura pinguis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1],EU793995.1_f0:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Direct Submission'_ ...__:annotation_date=13-JUL-2008:source_mol_type=genomic DNA:annotation_organism=Cyclura pinguis:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=EU793995.1_f0:source_haplotype=1:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Cyclura pinguis:annotation_gi=193875643:source_db_xref=taxon_118683:name=EU793995.1_f0:annotation_accessions=_'EU793995'_:source_feature_id=EU793995.1_source:GC_content=45.261669024:annotation_source=mitochondrion Cyclura pinguis:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1])100:1.3732e-06[&&NHX:support=100.0:dist=1.3732041214e-06:name=NoName:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout],(AY948119.1_f1:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Development of primers to characterize the mitochondrial control region of Gal pagos land and marine iguanas _Conolophus and Amblyrhynchus_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=11-AUG-2005:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_isolate=Isabela C932:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AY948119.1_f1:GC_content=31.0344827586:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Conolophus subcristatus:annotation_gi=61652748:source_db_xref=taxon_31140:name=AY948119.1_f1:annotation_accessions=_'AY948119'_:source_feature_id=AY948119.1_source:annotation_source=mitochondrion Conolophus subcristatus:source_tissue_type=blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1],((AY948120.1_f1:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Development of primers to characterize the mitochondrial control region of Gal pagos land and marine iguanas _Conolophus and Amblyrhynchus_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=11-AUG-2005:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_isolate=Isabela C955:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AY948120.1_f1:GC_content=31.0344827586:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Conolophus subcristatus:annotation_gi=61652750:source_db_xref=taxon_31140:name=AY948120.1_f1:annotation_accessions=_'AY948120'_:source_feature_id=AY948120.1_source:annotation_source=mitochondrion Conolophus subcristatus:source_tissue_type=blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1],AY948121.1_f1:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Development of primers to characterize the mitochondrial control region of Gal pagos land and marine iguanas _Conolophus and Amblyrhynchus_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=11-AUG-2005:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_isolate=Seymour Norte C076:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AY948121.1_f1:GC_content=31.0344827586:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Conolophus subcristatus:annotation_gi=61652752:source_db_xref=taxon_31140:name=AY948121.1_f1:annotation_accessions=_'AY948121'_:source_feature_id=AY948121.1_source:annotation_source=mitochondrion Conolophus subcristatus:source_tissue_type=blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1])3:1.3732e-06[&&NHX:support=3.0:dist=1.3732041214e-06:name=NoName:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout],AY948122.1_f1:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Development of primers to characterize the mitochondrial control region of Gal pagos land and marine iguanas _Conolophus and Amblyrhynchus_'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=11-AUG-2005:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_isolate=Seymour Norte C087:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AY948122.1_f1:GC_content=31.0344827586:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Conolophus subcristatus:annotation_gi=61652754:source_db_xref=taxon_31140:name=AY948122.1_f1:annotation_accessions=_'AY948122'_:source_feature_id=AY948122.1_source:annotation_source=mitochondrion Conolophus subcristatus:source_tissue_type=blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1])0:1.3732e-06[&&NHX:support=0.0:dist=1.3732041214e-06:name=NoName:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout])100:0.0589764[&&NHX:support=100.0:dist=0.0589763916683:name=NoName:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout])53:1.3732e-06[&&NHX:support=53.0:dist=1.3732041214e-06:name=NoName:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout])90:0.179058[&&NHX:support=90.0:dist=0.179057590921:name=NoName:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout],(AJ278511.2_f0:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Radiation of extant marsupials after the K/T boundary_ evidence from complete mitochondrial genomes'_ ...__ Reference_title_'Marsupial relationships and a timeline for marsupial radiation in South Gondwana'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=15-APR-2013:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=On May 20_ 2001 this sequence version replaced gi_13751149.:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AJ278511.2_f0:GC_content=45.0630252101:annotation_keywords=_'12S ribosomal RNA'_ '12S rRNA gene'_ '16S ribosomal RNA'_ '16S rRNA gene'_ 'ATP synthase F0 subunit 6'_ 'ATP synthase F0 subunit 8'_ 'atp6 gene'_ 'atp8 gene'_ 'complete genome'_ 'coxI gene'_ 'coxII gene'_ 'coxIII gene'_ 'cytb gene'_ 'cytochrome b'_ 'cytochrome c oxidase subunit I'_ 'cytochrome c oxidase subunit II'_ 'cytochrome c oxidase subunit III'_ 'NADH dehydrogenase subunit 1'_ 'NADH dehydrogenase subunit 2'_ 'NADH dehydrogenase subunit 3'_ 'NADH dehydrogenase subunit 4'_ 'NADH dehydrogenase subunit 4L'_ 'NADH dehydrogenase subunit 5'_ 'NADH dehydrogenase subunit 6'_ 'NADH1 gene'_ 'NADH2 gene'_ 'NADH3 gene'_ 'NADH4 gene'_ 'NADH4L gene'_ 'NADH5 gene'_ 'NADH6 gene'_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Iguana iguana:annotation_gi=14161124:source_db_xref=taxon_8517:name=AJ278511.2_f0:annotation_accessions=_'AJ278511'_:source_feature_id=AJ278511.2_source:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=12S rRNA:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=2],NC_002793.1_f0:1.3732e-06[&&NHX:dist=1.3732041214e-06:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=01-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=REVIEWED REFSEQ_ This record has been curated by NCBI staff. The_reference sequence was derived from AJ278511._COMPLETENESS_ full length.:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=NC_002793.1_f0:GC_content=45.0630252101:annotation_keywords=_'RefSeq'_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Iguana iguana:annotation_gi=14193045:source_db_xref=taxon_8517:name=NC_002793.1_f0:annotation_accessions=_'NC_002793'_:source_feature_id=NC_002793.1_source:annotation_source=mitochondrion Iguana iguana _common iguana_:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1])55:3.20661e-05[&&NHX:support=55.0:dist=3.20660902038e-05:name=NoName:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout],AB028742.1_f0:0.0278949[&&NHX:dist=0.0278949081601:tree_method_id=323661413757398.84_rrnS@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic Relationships of the Eublepharid Geckos _Reptilia_ Squamata__ A molecular Approach'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=15-DEC-2007:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:support=1.0:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AB028742.1_f0:GC_content=44.4444444444:annotation_keywords=_''_:product=12S ribosomal RNA:annotation_data_file_division=VRT:source_organism=Iguana iguana:annotation_gi=8918251:source_db_xref=taxon_8517:name=AB028742.1_f0:annotation_accessions=_'AB028742'_:source_feature_id=AB028742.1_source:annotation_source=mitochondrion Iguana iguana _common iguana_:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1]);






C_mos
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_C_mos@MafftLinsi@gappyout

newick format

((AF148705.1_f0:0.00275823,(GQ853277.1_f0:1.65825e-06,EU116680.1_f0:1.65825e-06)58:1.65825e-06)100:0.0253428,(AY987993.1_f0:0.00773776,(HM352538.1_f0:0.00525395,(((AF148708.1_f0:0.00269953,(HM352537.1_f0:1.65825e-06,(HM352536.1_f0:1.65825e-06,HM352535.1_f0:1.65825e-06)91:1.65825e-06)87:1.65825e-06)87:0.0027128,((HM352539.1_f0:1.65825e-06,(AY569650.1_f0:1.65825e-06,AY569649.1_f0:1.65825e-06)98:1.65825e-06)98:0.00270289,(DQ119595.1_f0:0.00267975,(HM352533.1_f0:1.65825e-06,HM352534.1_f0:0.00270909)100:0.0115069)100:0.00849324)53:1.65825e-06)80:1.65825e-06,((HM352531.1_f0:1.65825e-06,HM352532.1_f0:1.65825e-06)100:0.00552515,((AF315400.1_f0:0.0027355,AF315392.1_f0:0.00630386)49:1.65825e-06,(GU332022.1_f0:0.0027353,(GU332029.1_f0:0.00270353,((GU332028.1_f0:0.00270272,GU332027.1_f0:0.00272329)64:1.65825e-06,(GU332024.1_f0:1.65825e-06,(GU332026.1_f0:1.65825e-06,(GU332023.1_f0:1.65825e-06,GU332025.1_f0:1.65825e-06)100:1.65825e-06)0:1.65825e-06)54:1.65825e-06)64:1.65825e-06)75:0.00551284)74:0.00273984)75:0.00268143)96:0.00835365)88:0.00295565)96:0.0185814)100:0.0253428);


nhx format

((HM352533.1_f0:1.65825e-06[&&NHX:dist=1.65824546647e-06:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Cyclura ricordi:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352533.1_f0:db_xref=GI_298205421:GC_content=43.4666666667:protein_id=ADI61917.1:product=oocyte maturation factor Mos:annotation_data_file_division=VRT:translation=CSKNSLASRQSFWAELNVAHLEHKNVVRVIAASTCAPASQASLGTIIMEYVGNNTLHHIIYGTECKTAKKKEDGLGYGCVSLSITEALGYSCDIAAGLVFLHSHLIVHLDLKPANVFITEQNVCK:source_organism=Cyclura ricordi:annotation_gi=298205420:source_db_xref=taxon_51215:name=HM352533.1_f0:annotation_accessions=_'HM352533'_:source_feature_id=HM352533.1_source:annotation_source=Cyclura ricordi:gene=C-mos:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1],HM352534.1_f0:0.00270909[&&NHX:dist=0.00270908577363:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Cyclura carinata:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352534.1_f0:db_xref=GI_298205423:GC_content=43.7333333333:protein_id=ADI61918.1:product=oocyte maturation factor Mos:annotation_data_file_division=VRT:translation=CSKNSLASRQSFWAELNVAHLEHKNVVRVIAASTCAPASQASLGTIIMEYVGNNTLHHIIYGTECKTAKKKEDGLGYGCVSLSITEALGYSCDIAAGLVFLHSHLIVHLDLKPANVFITEQNVCK:source_organism=Cyclura carinata:annotation_gi=298205422:source_db_xref=taxon_118677:name=HM352534.1_f0:annotation_accessions=_'HM352534'_:source_feature_id=HM352534.1_source:annotation_source=Cyclura carinata:gene=C-mos:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Cyclura'_:annotation_sequence_version=1])100:0.0115069[&&NHX:support=100.0:dist=0.0115069137829:name=NoName:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout],((((HM352538.1_f0:0.00525395[&&NHX:dist=0.00525394901028:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout:annotation_references=_Reference_title_'Geographical structure and cryptic lineages within common green iguanas_ Iguana iguana'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=18-DEC-2012:source_mol_type=genomic DNA:annotation_organism=Iguana delicatissima:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=HM352538.1_f0:db_xref=GI_298205431:GC_content=42.9333333333:protein_id=ADI61922.1:product=oocyte maturation factor Mos:annotation_data_file_division=VRT:translation=CSKNSLASRQSFWAELNVAHLEHKNVVRVIAASTCAPASQDSLGTIIMEYVGNSTLHHIIYGTDCKTAKKKDDGLGCGHVSLSITEALGYSCDIAAGLVFLHSHLIVHLDLKPANVFITEQNVCK:source_organism=Iguana delicatissima:annotation_gi=298205430:source_db_xref=taxon_51191:name=HM352538.1_f0:annotation_accessions=_'HM352538'_:source_feature_id=HM352538.1_source:annotation_source=Iguana delicatissima:gene=C-mos:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 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ater:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=AF315400.1_f0:db_xref=GI_11596356:GC_content=43.4666666667:protein_id=AAG38578.1:product=C-mos:annotation_data_file_division=VRT:translation=CSKNSLASRQSFWAELNVAHLEHKNVVRVIAASTCAPASQDSLGTIIMEYVGNSTLHHIIYGTHCKTATKKDDGLGCGHVSLSITEALGYSCDIAAGLVFLHSHLIVHLDLKPANIFITEQNVCK:source_organism=Sauromalus ater:annotation_gi=11596355:source_db_xref=taxon_65995:name=AF315400.1_f0:annotation_accessions=_'AF315400'_:source_feature_id=AF315400.1_source:annotation_source=Sauromalus ater:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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sequences'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=14-JUN-1999:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:annotation_keywords=_''_:feature_id=AF148708.1_f0:db_xref=GI_5052792:GC_content=43.4666666667:protein_id=AAD38708.1:product=C-mos:annotation_data_file_division=VRT:translation=CSKNSLASRQSFWAELNVAHLEHKNVVRVIAASTCAPASQDSLGTIIMEYVGNSTLHHIIYGTDCKSAKKKDDGLGCGRVSLSITEALGYSCDIAAGLVFLHSHLIVHLDLKPANVFITEQNVCK:source_organism=Iguana iguana:annotation_gi=5052781:source_db_xref=taxon_8517:name=AF148708.1_f0:annotation_accessions=_'AF148708'_:source_feature_id=AF148708.1_source:annotation_source=Iguana iguana _common iguana_:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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'Iguana'_:annotation_sequence_version=1])98:1.65825e-06[&&NHX:support=98.0:dist=1.65824546647e-06:name=NoName:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout])98:0.00270289[&&NHX:support=98.0:dist=0.00270288561129:name=NoName:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout])100:0.00849324[&&NHX:support=100.0:dist=0.0084932390623:name=NoName:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout],DQ119595.1_f0:0.00267975[&&NHX:dist=0.00267975344138:tree_method_id=323661413757398.84_C_mos@MafftLinsi@gappyout:annotation_references=_Reference_title_'Early evolution of the venom system in lizards and snakes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=27-JAN-2006:source_mol_type=genomic DNA:annotation_organism=Cyclura 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MT-CYB
Alignment method: MafftLinsi
Trimming method: gappyout
Tree method: fD_fb
Tree Method ID: 323661413757398.84_MT-CYB@MafftLinsi@gappyout

newick format

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nhx format

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Sinaloa:annotation_sequence_version=1])100:0.00128937[&&NHX:support=100.0:dist=0.00128936887523:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],((HQ141265.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38047:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:source_isolate=Cp10:support=1.0:codon_start=3:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141265.1_f0:db_xref=GI_325311139:GC_content=47.2876151484:protein_id=ADZ11187.1:annotation_keywords=_''_:product=cytochrome 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Mazatlan:annotation_sequence_version=1])100:0.00128796[&&NHX:support=100.0:dist=0.0012879572549:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],(HQ141266.1_f0:0.00389826[&&NHX:dist=0.00389826201956:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38050:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:source_isolate=Cp11:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141266.1_f0:db_xref=GI_325311141:GC_content=47.0347648262:protein_id=ADZ11188.1:annotation_keywords=_''_:product=cytochrome 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Chametla:annotation_sequence_version=1],(HQ141259.1_f0:0.00529012[&&NHX:dist=0.00529012164559:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38041:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:source_isolate=Cp04:support=1.0:codon_start=3:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141259.1_f0:db_xref=GI_325311127:GC_content=47.1007121058:protein_id=ADZ11181.1:annotation_keywords=_''_:product=cytochrome 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Mazatlan:annotation_sequence_version=1],(HQ141269.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38001:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.0:source_isolate=Cp01:support=1.0:codon_start=3:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141269.1_f0:db_xref=GI_325311147:GC_content=46.571136131:protein_id=ADZ11191.1:annotation_keywords=_''_:product=cytochrome 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Culiacan:annotation_sequence_version=1],HQ141270.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38002:annotation_organism=Ctenosaura pectinata:prot_degen_prop=0.00615384615385:source_isolate=Cp02:support=1.0:codon_start=3:nuc_degen_prop=0.00204708290686:source_organelle=mitochondrion:feature_id=HQ141270.1_f0:db_xref=GI_325311149:GC_content=46.4687819857:protein_id=ADZ11192.1:annotation_keywords=_''_:product=cytochrome 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Navolato:annotation_sequence_version=1])100:0.00663633[&&NHX:support=100.0:dist=0.00663632857694:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00389982[&&NHX:support=100.0:dist=0.00389981523885:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])6:2.8064e-06[&&NHX:support=6.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])6:2.8064e-06[&&NHX:support=6.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00389197[&&NHX:support=100.0:dist=0.00389197361099:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00129128[&&NHX:support=100.0:dist=0.00129128386813:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.0803491[&&NHX:support=100.0:dist=0.0803490527286:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],(((HQ141275.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:source_sub_species=nolascensis:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38033:annotation_organism=Ctenosaura hemilopha nolascensis:prot_degen_prop=0.0:source_isolate=Ch34:support=1.0:codon_start=3:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141275.1_f0:db_xref=GI_325311159:GC_content=48.6010362694:protein_id=ADZ11197.1:product=cytochrome b:source_organism=Ctenosaura hemilopha 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Hermosillo:annotation_sequence_version=1])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],(HQ141237.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:source_sub_species=macrolopha:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=ROM 38022:annotation_organism=Ctenosaura hemilopha macrolopha:prot_degen_prop=0.00307692307692:source_isolate=Ch26:support=1.0:codon_start=3:nuc_degen_prop=0.00102354145343:source_organelle=mitochondrion:feature_id=HQ141237.1_f0:db_xref=GI_325311083:GC_content=48.2088024565:protein_id=ADZ11159.1:product=cytochrome b:source_organism=Ctenosaura hemilopha 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iguana:annotation_gi=4099624:source_db_xref=taxon_8517:name=U88954.1_f0:annotation_accessions=_'U88954'_:source_feature_id=U88954.1_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1],(NC_002793.1_f14:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=01-FEB-2010:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=REVIEWED REFSEQ_ This record has been curated by NCBI staff. The_reference sequence was derived from AJ278511._COMPLETENESS_ full length.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=NC_002793.1_f14:db_xref=GI_14193058:GC_content=47.3684210526:protein_id=NP_115848.1:annotation_keywords=_'RefSeq'_:product=cytochrome b:annotation_data_file_division=VRT:translation=MTVMRKSHPILKIFNNSFIDLPTPSNISAWWNFGSLLGLCLIVQTLTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMAAAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWVWGGFSVDNATLTRFFTFHFLLPFTIIALTMLHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMITTLLTLVLFSPNLLGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIVPLLHLSKQRSTTFRPFSQTLFWLLISNVLILTWIGGQPVEHPFIIIGQLASVTYFTLFLVVMPTTALLENKLLNW:source_organism=Iguana iguana:annotation_gi=14193045:source_db_xref=taxon_8517:name=NC_002793.1_f14:annotation_accessions=_'NC_002793'_:source_feature_id=NC_002793.1_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=CYTB:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=1],AJ278511.2_f14:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'The mitochondrial genomes of the iguana _Iguana iguana_ and the caiman _Caiman crocodylus__ implications for amniote phylogeny'_ ...__ Reference_title_'Radiation of extant marsupials after the K/T boundary_ evidence from complete mitochondrial genomes'_ ...__ Reference_title_'Marsupial relationships and a timeline for marsupial radiation in South Gondwana'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=15-APR-2013:source_mol_type=genomic DNA:annotation_organism=Iguana iguana:annotation_comment=On May 20_ 2001 this sequence version replaced gi_13751149.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AJ278511.2_f14:db_xref=GI_13751162:GC_content=47.3684210526:protein_id=CAC37095.1:annotation_keywords=_'12S ribosomal RNA'_ '12S rRNA gene'_ '16S ribosomal RNA'_ '16S rRNA gene'_ 'ATP synthase F0 subunit 6'_ 'ATP synthase F0 subunit 8'_ 'atp6 gene'_ 'atp8 gene'_ 'complete genome'_ 'coxI gene'_ 'coxII gene'_ 'coxIII gene'_ 'cytb gene'_ 'cytochrome b'_ 'cytochrome c oxidase subunit I'_ 'cytochrome c oxidase subunit II'_ 'cytochrome c oxidase subunit III'_ 'NADH dehydrogenase subunit 1'_ 'NADH dehydrogenase subunit 2'_ 'NADH dehydrogenase subunit 3'_ 'NADH dehydrogenase subunit 4'_ 'NADH dehydrogenase subunit 4L'_ 'NADH dehydrogenase subunit 5'_ 'NADH dehydrogenase subunit 6'_ 'NADH1 gene'_ 'NADH2 gene'_ 'NADH3 gene'_ 'NADH4 gene'_ 'NADH4L gene'_ 'NADH5 gene'_ 'NADH6 gene'_:product=cytochrome b:annotation_data_file_division=VRT:translation=MTVMRKSHPILKIFNNSFIDLPTPSNISAWWNFGSLLGLCLIVQTLTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMAAAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWVWGGFSVDNATLTRFFTFHFLLPFTIIALTMLHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMITTLLTLVLFSPNLLGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIVPLLHLSKQRSTTFRPFSQTLFWLLISNVLILTWIGGQPVEHPFIIIGQLASVTYFTLFLVVMPTTALLENKLLNW:source_organism=Iguana iguana:annotation_gi=14161124:source_db_xref=taxon_8517:name=AJ278511.2_f14:annotation_accessions=_'AJ278511'_:source_feature_id=AJ278511.2_source:transl_table=2:annotation_source=mitochondrion Iguana iguana _common iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Iguana'_:annotation_sequence_version=2])100:0.0620095[&&NHX:support=100.0:dist=0.0620094751921:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.0160774[&&NHX:support=100.0:dist=0.0160773535224:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.0522874[&&NHX:support=100.0:dist=0.0522874203702:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],(((((((((HQ141243.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-22a:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:source_isolate=S2:support=1.0:codon_start=3:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141243.1_f0:db_xref=GI_325311095:GC_content=48.5158648925:protein_id=ADZ11165.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=LTGLFLAMHYTADISLAFSSIAHICRNVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWIWGGFSVDNATLTRFFTFHFLLPFMIIGLTMMHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMIILLLTLTLFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRSNTFRPFSQILFWLLISNVLILTWIGGQPVEHPFIIIGQLASIVYFMLFLTIMPATA:source_organism=Sauromalus ater:annotation_gi=325311094:source_db_xref=taxon_65995:name=HQ141243.1_f0:annotation_accessions=_'HQ141243'_:source_feature_id=HQ141243.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=Cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 50 km. SW of Caborca:annotation_sequence_version=1],AF020231.1_f0:0.00389023[&&NHX:dist=0.00389022847425:source_note=specimen from Caborca_ Mexico _pop. #22_:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'A Phylogenetic analysis of body size evolution and biogeography in chuckwallas _Sauromalus_ and other iguanines'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=30-SEP-1997:source_mol_type=genomic DNA:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF020231.1_f0:db_xref=GI_2444319:GC_content=48.4478935698:protein_id=AAB71558.1:annotation_keywords=_''_:product=cytochrome b:source_strain=townsendi:annotation_data_file_division=VRT:translation=LIDLPAPSNISAWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSIAHICRNVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWIWGGFSVDNATLTRFFTFHFLLPFMIIGLTMMHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMIILLLTLTLFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRSNTF:source_organism=Sauromalus ater:annotation_gi=2444318:source_db_xref=taxon_65995:name=AF020231.1_f0:annotation_accessions=_'AF020231'_:source_feature_id=AF020231.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:annotation_sequence_version=1])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],HQ141244.1_f0:0.00128411[&&NHX:dist=0.00128410751041:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-22b:annotation_organism=Sauromalus ater:prot_degen_prop=0.00615384615385:source_isolate=S3:support=1.0:codon_start=3:nuc_degen_prop=0.00409416581372:source_organelle=mitochondrion:feature_id=HQ141244.1_f0:db_xref=GI_325311097:GC_content=48.2088024565:protein_id=ADZ11166.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=LTGLFLAMHYTADISLAFSSIAHICRNVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWIWGGFSVDNATLTRFFTFHFLLPFMIIGLTMMHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMIILLLTLTLFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRSNTFRPFSQILFWLLISNVLILTWIGGQPVEHPFIIIGQLASIVYFXXFLTIMPATA:source_organism=Sauromalus ater:annotation_gi=325311096:source_db_xref=taxon_65995:name=HQ141244.1_f0:annotation_accessions=_'HQ141244'_:source_feature_id=HQ141244.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=Cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 50 km. SW of Caborca:annotation_sequence_version=1])100:0.00258984[&&NHX:support=100.0:dist=0.0025898393521:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],(HQ141245.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Seri Indian traditional knowledge and molecular biology agree_ no express train for island-hopping spiny-tailed iguanas in the Sea of Cortes'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=12-MAR-2011:source_mol_type=genomic DNA:source_specimen_voucher=KP-21:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:source_isolate=S5:support=1.0:codon_start=3:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=HQ141245.1_f0:db_xref=GI_325311099:GC_content=48.5714285714:protein_id=ADZ11167.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=ILTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWIWGGFSVDNATLTRFFTFHFLLPFMIIGLTMMHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMIILLLTLTLFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRSNTFRPFSQILFWLLISNLLILTWIGGQPVEHPFIIIGQLASIVYFMLFLTIMPATA:source_organism=Sauromalus ater:annotation_gi=325311098:source_db_xref=taxon_65995:name=HQ141245.1_f0:annotation_accessions=_'HQ141245'_:source_feature_id=HQ141245.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=Cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Sauromalus'_:source_country=Mexico_ Sonora_ 8 km SW of Caborca:annotation_sequence_version=1],AF020232.1_f0:0.001287[&&NHX:dist=0.00128699861461:source_note=specimen from Caborca_ Mexico _pop. #21_:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'A Phylogenetic analysis of body size evolution and biogeography in chuckwallas _Sauromalus_ and other iguanines'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=30-SEP-1997:source_mol_type=genomic DNA:annotation_organism=Sauromalus ater:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF020232.1_f0:db_xref=GI_2444321:GC_content=48.4478935698:protein_id=AAB71559.1:annotation_keywords=_''_:product=cytochrome b:source_strain=townsendi:annotation_data_file_division=VRT:translation=LIDLPAPSNISAWWNFGSLLGLCLIIQILTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWIWGGFSVDNATLTRFFTFHFLLPFMIIGLTMMHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMIILLLTLTLFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRSNTF:source_organism=Sauromalus ater:annotation_gi=2444320:source_db_xref=taxon_65995:name=AF020232.1_f0:annotation_accessions=_'AF020232'_:source_feature_id=AF020232.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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b:source_strain=townsendi:annotation_data_file_division=VRT:translation=LIDLPAPSNISAWWNFGSLLGLCLIIQILTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYLFKETWNIGVVLLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGATLVEWIWGGFSVDNATLTRFFTFHFLLPFMIIGLTMMHLLFLHETGSNNPTGLNSNPDKIPFHPYFSYKDLLGATLMIILLLTLTLFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRSNTF:source_organism=Sauromalus ater:annotation_gi=2444322:source_db_xref=taxon_65995:name=AF020233.1_f0:annotation_accessions=_'AF020233'_:source_feature_id=AF020233.1_source:transl_table=2:annotation_source=mitochondrion Sauromalus ater:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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fasciatus:prot_degen_prop=0.0:source_isolate=1E579C1:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459042.1_f0:db_xref=GI_27462743:GC_content=46.6876971609:protein_id=AAO15565.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=WNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLVMATAFVGYVLPWG:source_organism=Brachylophus fasciatus:annotation_gi=27462742:source_db_xref=taxon_46195:name=AF459042.1_f0:annotation_accessions=_'AF459042'_:source_feature_id=AF459042.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1],(U48834.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Genetic discrimination between the crested iguana Brachylophus vitiensis and the banded iguana Brachylophus fasciatus'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=13-MAR-2002:source_mol_type=genomic DNA:source_dev_stage=Adult:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48834.1_f0:db_xref=GI_1236061:GC_content=47.1153846154:protein_id=AAA93373.1:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome B:annotation_data_file_division=VRT:translation=MTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWN:source_organism=Brachylophus 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fasciatus:annotation_comment=On Mar 11_ 2002 this sequence version replaced gi_1236058.:prot_degen_prop=0.0:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48833.2_f0:db_xref=GI_19343364:GC_content=45.8333333333:protein_id=AAA93372.2:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome B:annotation_data_file_division=VRT:translation=IMTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLVM:source_organism=Brachylophus fasciatus:annotation_gi=19343363:source_db_xref=taxon_46195:name=U48833.2_f0:annotation_accessions=_'U48833'_:source_feature_id=U48833.2_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:source_tissue_type=Blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=2])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00421846[&&NHX:support=100.0:dist=0.00421846122087:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],((((AF459041.1_f0:0.00428455[&&NHX:dist=0.0042845483008:source_note=biotype_ Monu:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus 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discrimination between the crested iguana Brachylophus vitiensis and the banded iguana Brachylophus fasciatus'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=13-MAR-2002:source_mol_type=genomic DNA:source_dev_stage=Adult:annotation_organism=Brachylophus vitiensis:annotation_comment=On Mar 11_ 2002 this sequence version replaced gi_1236064.:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48836.2_f0:db_xref=GI_19343368:GC_content=45.3201970443:protein_id=AAA93375.2:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome B:annotation_data_file_division=VRT:translation=YTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVIYYW:source_organism=Brachylophus 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vitiensis:annotation_comment=On Mar 11_ 2002 this sequence version replaced gi_1236070.:prot_degen_prop=0.0:support=1.0:codon_start=3:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48839.2_f0:db_xref=GI_1236071:GC_content=46.1111111111:protein_id=AAA93378.1:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome B:annotation_data_file_division=VRT:translation=HYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKET:source_organism=Brachylophus vitiensis:annotation_gi=19343369:source_db_xref=taxon_46196:name=U48839.2_f0:annotation_accessions=_'U48839'_:source_feature_id=U48839.2_source:transl_table=2:annotation_source=mitochondrion Brachylophus vitiensis _crested iguana_:source_tissue_type=Blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=2],(U48835.2_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Genetic discrimination between the crested iguana Brachylophus vitiensis and the banded iguana Brachylophus fasciatus'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=13-MAR-2002:source_mol_type=genomic DNA:source_dev_stage=Adult:annotation_organism=Brachylophus vitiensis:annotation_comment=On Mar 11_ 2002 this sequence version replaced gi_1236062.:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48835.2_f0:db_xref=GI_19343366:GC_content=46.568627451:protein_id=AAA93374.2:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome 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...__:annotation_date=13-MAR-2002:source_mol_type=genomic DNA:source_dev_stage=Adult:annotation_organism=Brachylophus vitiensis:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48838.1_f0:db_xref=GI_1236069:GC_content=45.1476793249:protein_id=AAA93377.1:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome B:annotation_data_file_division=VRT:translation=MTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLV:source_organism=Brachylophus vitiensis:annotation_gi=1236068:source_db_xref=taxon_46196:name=U48838.1_f0:annotation_accessions=_'U48838'_:source_feature_id=U48838.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus vitiensis _crested iguana_:source_tissue_type=Blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1],AF459037.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:source_note=biotype_ Yadua Taba:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus vitiensis:prot_degen_prop=0.0:source_isolate=22bda2:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459037.1_f0:db_xref=GI_27462733:GC_content=45.7413249211:protein_id=AAO15560.1:annotation_keywords=_''_:product=cytochrome 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'Brachylophus'_:annotation_sequence_version=1])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00425804[&&NHX:support=100.0:dist=0.00425803599033:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],U48837.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Genetic discrimination between the crested iguana Brachylophus vitiensis and the banded iguana Brachylophus fasciatus'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=13-MAR-2002:source_mol_type=genomic DNA:source_dev_stage=Adult:annotation_organism=Brachylophus 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'Brachylophus'_:annotation_sequence_version=1])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],U48840.2_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Genetic discrimination between the crested iguana Brachylophus vitiensis and the banded iguana Brachylophus fasciatus'_ ...__ Reference_title_'Direct Submission'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=13-MAR-2002:source_mol_type=genomic DNA:source_dev_stage=Adult:annotation_organism=Brachylophus vitiensis:annotation_comment=On Mar 11_ 2002 this sequence version replaced gi_1236072.:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48840.2_f0:db_xref=GI_19343371:GC_content=44.9275362319:protein_id=AAA93379.2:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome B:annotation_data_file_division=VRT:translation=YTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLV:source_organism=Brachylophus vitiensis:annotation_gi=19343370:source_db_xref=taxon_46196:name=U48840.2_f0:annotation_accessions=_'U48840'_:source_feature_id=U48840.2_source:transl_table=2:annotation_source=mitochondrion Brachylophus vitiensis _crested iguana_:source_tissue_type=Blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=2])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00883371[&&NHX:support=100.0:dist=0.00883370897428:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],((AF459043.1_f0:0.00436693[&&NHX:dist=0.00436692984295:source_note=biotype_ Ovalau:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:source_isolate=1BDD540:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459043.1_f0:db_xref=GI_27462745:GC_content=45.7413249211:protein_id=AAO15566.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=WNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHISRDVQHGWFLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLVMATAFVGYVLPWG:source_organism=Brachylophus fasciatus:annotation_gi=27462744:source_db_xref=taxon_46195:name=AF459043.1_f0:annotation_accessions=_'AF459043'_:source_feature_id=AF459043.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1],((AF459046.1_f0:0.0611825[&&NHX:dist=0.0611824995388:source_note=biotype_ Tongatapu:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:source_isolate=TBP1:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459046.1_f0:db_xref=GI_27462751:GC_content=44.4794952681:protein_id=AAO15569.1:annotation_keywords=_''_:product=cytochrome 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Reference_title_'Direct Submission'_ ...__:annotation_date=30-SEP-1997:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF020257.1_f0:db_xref=GI_2444371:GC_content=47.6718403548:protein_id=AAB71584.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=LIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYLGTALVEWVWGGFSVDNATLTRFFTFHFLLPFMIIGASAVHLLFLHETGSNNPTGLHSNSDKVPFHPYFSYKDLLGAIITTLALLTLALFSPNLLGDPENFSPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILTIIPLLHTSKQRSNTF:source_organism=Brachylophus fasciatus:annotation_gi=2444370:source_db_xref=taxon_46195:name=AF020257.1_f0:annotation_accessions=_'AF020257'_:source_feature_id=AF020257.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1],(AF459044.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:source_note=biotype_ Kadavu:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:source_isolate=1E6F5C2:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459044.1_f0:db_xref=GI_27462747:GC_content=46.0567823344:protein_id=AAO15567.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=WNFGSLLGLCLIVQIMTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASVFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLVMATAFVGYVLPWG:source_organism=Brachylophus fasciatus:annotation_gi=27462746:source_db_xref=taxon_46195:name=AF459044.1_f0:annotation_accessions=_'AF459044'_:source_feature_id=AF459044.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1],AF459045.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:source_note=biotype_ Kadavu:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus fasciatus:prot_degen_prop=0.0:source_isolate=1E58DDF:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459045.1_f0:db_xref=GI_27462749:GC_content=45.7413249211:protein_id=AAO15568.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=WNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASVFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLVMATAFVGYVLPWG:source_organism=Brachylophus fasciatus:annotation_gi=27462748:source_db_xref=taxon_46195:name=AF459045.1_f0:annotation_accessions=_'AF459045'_:source_feature_id=AF459045.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus fasciatus _banded iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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gi_1236074.:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U48841.2_f0:db_xref=GI_19343373:GC_content=46.2365591398:protein_id=AAA93380.2:annotation_keywords=_''_:function=mitochondrial electron transport:product=cytochrome B:annotation_data_file_division=VRT:translation=YTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVG:source_organism=Brachylophus vitiensis:annotation_gi=19343372:source_db_xref=taxon_46196:name=U48841.2_f0:annotation_accessions=_'U48841'_:source_feature_id=U48841.2_source:transl_table=2:annotation_source=mitochondrion Brachylophus vitiensis _crested iguana_:source_tissue_type=Blood:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=2])100:2.8064e-06[&&NHX:support=100.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00429064[&&NHX:support=100.0:dist=0.00429063851422:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],AF459038.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:source_note=biotype_ Monuriki:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus vitiensis:prot_degen_prop=0.0:source_isolate=IgC1:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459038.1_f0:db_xref=GI_27462735:GC_content=45.7413249211:protein_id=AAO15561.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=WNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKETWNVGVILLLLVMATAFVGYVLPWG:source_organism=Brachylophus vitiensis:annotation_gi=27462734:source_db_xref=taxon_46196:name=AF459038.1_f0:annotation_accessions=_'AF459038'_:source_feature_id=AF459038.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus vitiensis _crested iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Brachylophus'_:annotation_sequence_version=1])100:0.00410312[&&NHX:support=100.0:dist=0.00410312010504:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])100:0.00899129[&&NHX:support=100.0:dist=0.00899128527017:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],AF459040.1_f0:0.00449282[&&NHX:dist=0.00449281610637:source_note=biotype_ Waya:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'Phylogenetic relationships between Fijian crested iguanas _Brachylophus vitiensis_ and Fijian and Tongan banded iguanas _B. fasciatus_ inferred from mitochondrial cytochrome b sequence and microsatellites'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=02-JAN-2003:source_mol_type=genomic DNA:annotation_organism=Brachylophus vitiensis:prot_degen_prop=0.0:source_isolate=Waya4:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=AF459040.1_f0:db_xref=GI_27462739:GC_content=46.0567823344:protein_id=AAO15563.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=WNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHISRDVQHGWLLRNLHANGASMFFICIYLHIGRGLYYGSYAFKDTWNVGVILLLLVMATAFVGYVLPWG:source_organism=Brachylophus vitiensis:annotation_gi=27462738:source_db_xref=taxon_46196:name=AF459040.1_f0:annotation_accessions=_'AF459040'_:source_feature_id=AF459040.1_source:transl_table=2:annotation_source=mitochondrion Brachylophus vitiensis _crested iguana_:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 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Rosa:prot_degen_prop=0.0:source_isolate=VC8:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=FJ535948.1_f0:db_xref=GI_222356075:GC_content=45.7322551662:protein_id=ACM48664.1:product=cytochrome b:source_organism=Conolophus subcristatus:annotation_data_file_division=VRT:translation=ILKIINNSFIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRSLHANGASMFFICLYLHIGRGLYYGSYLFKETWNLGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWVWGGFSVDNATLTRFFTFHFLLPFVIIGVTLLHLLFLHETGSNNPTGLNSNPDKIPFHPYYSYKDLLGAILMIIALLSLTLFSPNLLTDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRTNTFRPFSQTLFWLLVSNVLILTWIGGQPVEHPFIIIGQLASASYFLLFLMIMPITALLENKLLNW:annotation_keywords=_''_:annotation_gi=222356074:source_db_xref=taxon_31140:source_sex=male:name=FJ535948.1_f0:annotation_accessions=_'FJ535948'_:source_feature_id=FJ535948.1_source:transl_table=2:annotation_source=mitochondrion Conolophus subcristatus:source_collection_date=14-Jun-2003:source_tissue_type=blood:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:source_country=Ecuador_ Venecia_ Santa Cruz_ Galapagos:annotation_sequence_version=1])100:0.00128189[&&NHX:support=100.0:dist=0.00128188661887:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],(U88952.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'The microevolution of the Galapagos marine iguanas _Amblyrhynchus cristatus_ assessed by nuclear and mitochondrial genetic analyses'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=05-JUN-2000:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:prot_degen_prop=0.0:support=1.0:codon_start=2:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=U88952.1_f0:db_xref=GI_4099621:GC_content=45.0331125828:protein_id=AAD00663.1:annotation_keywords=_''_:product=cytochrome b:annotation_data_file_division=VRT:translation=KSHPILKIINNSFIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRSLHANGASMFFICLYLHIGRGLYYGSYLFKETWNLGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPY:source_organism=Conolophus subcristatus:annotation_gi=4099620:source_db_xref=taxon_31140:name=U88952.1_f0:annotation_accessions=_'U88952'_:source_feature_id=U88952.1_source:transl_table=2:annotation_source=mitochondrion Conolophus subcristatus:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:annotation_sequence_version=1],((((((FJ535923.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'An overlooked pink species of land iguana in the Galapagos'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-FEB-2009:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_collected_by=S. Rosa and M. 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Rosa and M. 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Rosa and M. 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Rosa and M. Milinkovitch:prot_degen_prop=0.0:source_isolate=PZS2:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=FJ535918.1_f0:db_xref=GI_222356015:GC_content=45.5525606469:protein_id=ACM48634.1:product=cytochrome b:source_organism=Conolophus subcristatus:annotation_data_file_division=VRT:translation=ILKIINNSFIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRSLHANGASMFFICLYLHIGRGLYYGSYLFKETWNLGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWVWGGFSVDNATLTRFFTFHFLLPFMIIGVTLLHLLFLHETGSNNPTGLNSNPDKIPFHPYYSYKDLLGAILMIIALLSLTLFSPNLLTDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRTNTFRPFSQTLFWLLVSNVLILTWIGGQPVEHPFIIIGQLASASYFLLFLMIMPITALLENKLLNW:annotation_keywords=_''_:annotation_gi=222356014:source_db_xref=taxon_31140:name=FJ535918.1_f0:annotation_accessions=_'FJ535918'_:source_feature_id=FJ535918.1_source:transl_table=2:annotation_source=mitochondrion Conolophus subcristatus:source_collection_date=24-May-2003:source_tissue_type=blood:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:source_country=Ecuador_ Plaza Sur_ Galapagos:annotation_sequence_version=1])3:2.8064e-06[&&NHX:support=3.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])0:2.8064e-06[&&NHX:support=0.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],(FJ535917.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'An overlooked pink species of land iguana in the Galapagos'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-FEB-2009:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_collected_by=S. Rosa and M. Milinkovitch:prot_degen_prop=0.0:source_isolate=PZS10:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=FJ535917.1_f0:db_xref=GI_222356013:GC_content=45.5525606469:protein_id=ACM48633.1:product=cytochrome b:source_organism=Conolophus subcristatus:annotation_data_file_division=VRT:translation=ILKIINNSFIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRSLHANGASMFFICLYLHIGRGLYYGSYLFKETWNLGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWVWGGFSVDNATLTRFFTFHFLLPFMIIGVTLLHLLFLHETGSNNPTGLNSNPDKIPFHPYYSYKDLLGAILMIIALLSLTLFSPNLLTDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRTNTFRPFSQTLFWLLVSNVLILTWIGGQPVEHPFIIIGQLASASYFLLFLMIMPITALLENKLLNW:annotation_keywords=_''_:annotation_gi=222356012:source_db_xref=taxon_31140:name=FJ535917.1_f0:annotation_accessions=_'FJ535917'_:source_feature_id=FJ535917.1_source:transl_table=2:annotation_source=mitochondrion Conolophus subcristatus:source_collection_date=24-May-2003:source_tissue_type=blood:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:source_country=Ecuador_ Plaza Sur_ Galapagos:annotation_sequence_version=1],(FJ535919.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'An overlooked pink species of land iguana in the Galapagos'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-FEB-2009:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_collected_by=S. Rosa and M. 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Rosa and M. Milinkovitch:prot_degen_prop=0.0:source_isolate=PZS5:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=FJ535921.1_f0:db_xref=GI_222356021:GC_content=45.5525606469:protein_id=ACM48637.1:product=cytochrome b:source_organism=Conolophus subcristatus:annotation_data_file_division=VRT:translation=ILKIINNSFIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRSLHANGASMFFICLYLHIGRGLYYGSYLFKETWNLGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWVWGGFSVDNATLTRFFTFHFLLPFMIIGVTLLHLLFLHETGSNNPTGLNSNPDKIPFHPYYSYKDLLGAILMIIALLSLTLFSPNLLTDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRTNTFRPFSQTLFWLLVSNVLILTWIGGQPVEHPFIIIGQLASASYFLLFLMIMPITALLENKLLNW:annotation_keywords=_''_:annotation_gi=222356020:source_db_xref=taxon_31140:name=FJ535921.1_f0:annotation_accessions=_'FJ535921'_:source_feature_id=FJ535921.1_source:transl_table=2:annotation_source=mitochondrion Conolophus subcristatus:source_collection_date=24-May-2003:source_tissue_type=blood:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:source_country=Ecuador_ Plaza Sur_ Galapagos:annotation_sequence_version=1])0:2.8064e-06[&&NHX:support=0.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])0:2.8064e-06[&&NHX:support=0.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout])0:2.8064e-06[&&NHX:support=0.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],FJ535922.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'An overlooked pink species of land iguana in the Galapagos'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-FEB-2009:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_collected_by=S. Rosa and M. Milinkovitch:prot_degen_prop=0.0:source_isolate=PZS6:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=FJ535922.1_f0:db_xref=GI_222356023:GC_content=45.5525606469:protein_id=ACM48638.1:product=cytochrome b:source_organism=Conolophus subcristatus:annotation_data_file_division=VRT:translation=ILKIINNSFIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRSLHANGASMFFICLYLHIGRGLYYGSYLFKETWNLGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWVWGGFSVDNATLTRFFTFHFLLPFMIIGVTLLHLLFLHETGSNNPTGLNSNPDKIPFHPYYSYKDLLGAILMIIALLSLTLFSPNLLTDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRTNTFRPFSQTLFWLLVSNVLILTWIGGQPVEHPFIIIGQLASASYFLLFLMIMPITALLENKLLNW:annotation_keywords=_''_:annotation_gi=222356022:source_db_xref=taxon_31140:name=FJ535922.1_f0:annotation_accessions=_'FJ535922'_:source_feature_id=FJ535922.1_source:transl_table=2:annotation_source=mitochondrion Conolophus subcristatus:source_collection_date=24-May-2003:source_tissue_type=blood:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:source_country=Ecuador_ Plaza Sur_ Galapagos:annotation_sequence_version=1])0:2.8064e-06[&&NHX:support=0.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],FJ535925.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'An overlooked pink species of land iguana in the Galapagos'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-FEB-2009:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_collected_by=S. Rosa and M. Milinkovitch:prot_degen_prop=0.0:source_isolate=PZS9:support=1.0:codon_start=1:nuc_degen_prop=0.0:source_organelle=mitochondrion:feature_id=FJ535925.1_f0:db_xref=GI_222356029:GC_content=45.5525606469:protein_id=ACM48641.1:product=cytochrome b:source_organism=Conolophus subcristatus:annotation_data_file_division=VRT:translation=ILKIINNSFIDLPTPSNISAWWNFGSLLGLCLIIQIMTGLFLAMHYTADISSAFSSIAHICRDVQYGWLIRSLHANGASMFFICLYLHIGRGLYYGSYLFKETWNLGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWVWGGFSVDNATLTRFFTFHFLLPFMIIGVTLLHLLFLHETGSNNPTGLNSNPDKIPFHPYYSYKDLLGAILMIIALLSLTLFSPNLLTDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMIIPLLHLSKQRTNTFRPFSQTLFWLLVSNVLILTWIGGQPVEHPFIIIGQLASASYFLLFLMIMPITALLENKLLNW:annotation_keywords=_''_:annotation_gi=222356028:source_db_xref=taxon_31140:name=FJ535925.1_f0:annotation_accessions=_'FJ535925'_:source_feature_id=FJ535925.1_source:transl_table=2:annotation_source=mitochondrion Conolophus subcristatus:source_collection_date=24-May-2003:source_tissue_type=blood:gene=cytb:annotation_taxonomy=_'Eukaryota'_ 'Metazoa'_ 'Chordata'_ 'Craniata'_ 'Vertebrata'_ 'Euteleostomi'_ 'Lepidosauria'_ 'Squamata'_ 'Bifurcata'_ 'Unidentata'_ 'Episquamata'_ 'Toxicofera'_ 'Iguania'_ 'Iguanidae'_ 'Iguaninae'_ 'Conolophus'_:source_country=Ecuador_ Plaza Sur_ Galapagos:annotation_sequence_version=1])0:2.8064e-06[&&NHX:support=0.0:dist=2.806401631e-06:name=NoName:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout],FJ535924.1_f0:2.8064e-06[&&NHX:dist=2.806401631e-06:tree_method_id=323661413757398.84_MT-CYB@MafftLinsi@gappyout:annotation_references=_Reference_title_'An overlooked pink species of land iguana in the Galapagos'_ ...__ Reference_title_'Direct Submission'_ ...__:annotation_date=07-FEB-2009:source_mol_type=genomic DNA:annotation_organism=Conolophus subcristatus:source_collected_by=S. Rosa and M. 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